Notebook Project

This is a project carried out at the University of Lund for the course called "Reproducible and Interactive Data Science using the Jupyter Notebook". The notebook explains and elaborate upon some of the data analysis carried out in my masters thesis. Read more in the notebook!

How to run the notebook

Hello there!

To run the notebook you'll have to do the following.

1. If you do not have anaconda, install Anaconda. This will also install the Jupyter Notebook for you. Alternatively install Jupyter Notebook seperately.

2. Clone this repository with git:

git clone <URL for this repository>

Alternatively you can also download it from GitHub.

3. Navigate to the project folder

4. Install the enviroment.yml file with Anaconda.

In the terminal write:

conda env create -f environmental.yml

Alternatively use pip if you did not install Anaconda

pip install <required packages>

For required packages see the enviroment.yml file.

5. Activate the new environment with Anaconda like so:

source activate padesign

If you have windows exclude the "source"

6. Run Jupyter Notebook by writing the following in the terminal

jupyter notebook

Send a message to mads.jeppesen@biochemistry.lu.se for any questions.