FlowJo Tercen Plugin

Run Plugin by using a released version

• Download the latest release from github. Click on the latest success workflow (colored green). Then click on "tercen_flowjo_plugin" below Artifacts at the bottom. The downloaded file is a zip file that contains the JAR file.
• Put the JAR file in the FlowJo plugin directory
• Put the tercen.properties file in the same directory and adjust properties if needed
• Restart FlowJo
• Plugin should be available under 'Workspace' -> 'Plugins'

Run/ Debug plugin (Developer)

General note:

• Use JDK9 for developing plugins and debugging.

Run plugin:

• Import project from github in IDE
• Install FlowJo plugin files. See below, check the path of your FlowJo installation
• Create JAR file with dependencies: mvn clean compile assembly:single
• Put the JAR file in the FlowJo plugin directory
• Put the tercen.properties file in the same directory and adjust properties if needed
• Restart FlowJo
• Plugin should be available under 'Workspace' -> 'Plugins'

mvn install:install-file -Dfile="third\FlowJo.jar" -DgroupId=com.flowjo -DartifactId=flowjo -Dversion=10.8.0 -Dpackaging=jar -DgeneratePom=true

mvn install:install-file -Dfile="third\fjlib-2.4.0.jar" -DgroupId=com.flowjo -DartifactId=flowlib -Dversion=2.4.0 -Dpackaging=jar -DgeneratePom=true

mvn install:install-file -Dfile="third\fjengine-2.5.0.jar" -DgroupId=com.flowjo -DartifactId=fjengine -Dversion=2.5.0 -Dpackaging=jar -DgeneratePom=true

Debug plugin:

• Make sure you have exported plugin to FlowJo (see previous section)
• Add all the JAR's fom FlowJo
• Create debug configuration
• Main class: com.treestar.flowjo.main.Main

• VM arguments:

  -Djava.library.path="C:\Program Files\FlowJo 10.8.0"
  -Xms2048M
  -Xmx4096M

• Copy release.properties from FlowJo dir to your Java project (main directory)