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tetomonti
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Hydra
A flexible RNASeq pipeline
Apache License 2.0
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installation instruction for R clickme package updation needed
#37
bioliyezhang
opened
7 years ago
0
Problem with STAR alignment for not compressed fastq input files
#36
bioliyezhang
closed
7 years ago
0
Problem with cutadapt for v1.0.2
#35
bioliyezhang
closed
7 years ago
0
Problem with Installing R libraries with v1.0.2
#34
bioliyezhang
closed
7 years ago
0
Updated Version of Hydra (v1.0.2)
#33
ericreed
closed
7 years ago
2
Error when trying to install
#32
vkartha
closed
7 years ago
4
pipeline.py issues
#31
ericreed
closed
7 years ago
9
conda package
#30
ericreed
closed
7 years ago
4
Add option to change first line of qsub files
#29
gusef
opened
8 years ago
0
Replace the clickme plots with plot.ly plots
#28
gusef
opened
8 years ago
0
Skipping cutadapt
#27
ericreed
closed
8 years ago
1
Create Anaconda wrapper for SNV dection 'pipeline'
#26
tetomonti
opened
8 years ago
0
potential file name handle issue?
#25
bioliyezhang
opened
8 years ago
0
Add a flag that let's you skip adapter trimming
#24
tetomonti
closed
8 years ago
1
Evaluate feasibility of Shiny interface
#23
tetomonti
closed
8 years ago
3
Python path needs to be overwritten
#22
tetomonti
closed
8 years ago
4
Run Hydra on the Cloud
#21
tetomonti
opened
8 years ago
0
R Error for sample names beginning with numbers
#20
tetomonti
closed
8 years ago
1
Revamp parameter files
#19
gusef
closed
9 years ago
0
Update documentation
#18
gusef
closed
9 years ago
0
Add an option if all samples failed, stop the pipeline
#17
gusef
closed
8 years ago
1
Initial prompting to remove existing result folder/files even if they don't exist
#16
vkartha
closed
9 years ago
1
Add an indicator on how many samples were successfully processed in the main.log at each step
#15
gusef
opened
9 years ago
0
Resume with corrupt files
#14
gusef
closed
9 years ago
0
Check if a sample was successfully finished before submitting a job
#13
gusef
closed
9 years ago
0
Add an option that gets rid of all temporary files on the go to save space
#12
gusef
closed
9 years ago
0
renaming to avoid conflicts
#11
yannpaul
closed
9 years ago
0
default branch is v2.0.0 not master
#10
yannpaul
closed
9 years ago
1
Move conda package making into the repository
#9
gusef
closed
9 years ago
6
Add boxplots for the count data distribution
#8
gusef
closed
9 years ago
0
Pick the license we want to use
#7
gusef
closed
9 years ago
0
Move the conda packages to binstar
#6
gusef
closed
9 years ago
0
Specify fixed version requirements for the tools
#5
gusef
closed
9 years ago
0
Large scale usecase
#4
gusef
closed
9 years ago
0
Revamp the html reporting
#3
gusef
closed
9 years ago
0
Add PCA plots to HTSeq and featureCounts
#2
gusef
closed
9 years ago
1
LSF / bsub module
#1
gusef
closed
8 years ago
1