cholla_climate_IPM

The repo contains all the data and scripts needed to reproduce the analyses presented in: Czachura, K. and T.E.X. Miller. 2021. Subtle dimensions of climate change have strong demographic effects on a cactus population in extinction debt. Journal of Ecology 108: 2557-2570

• The climate data are processed and analyzed here: https://github.com/texmiller/cholla_climate_IPM/blob/master/climate_data_processing.Rmd
• The climate-demography modeling is coded here: https://github.com/texmiller/cholla_climate_IPM/blob/master/cholla_climate_demography.R
• Source functions for the IPM are written here: https://github.com/texmiller/cholla_climate_IPM/blob/master/cholla_climate_IPM_SOURCE.R
• The IPM is implemented and manuscript-version figures are created here: https://github.com/texmiller/cholla_climate_IPM/blob/master/cholla_climate_IPM_ANALYSIS.R
• The published manuscript may be recompiled from: https://github.com/texmiller/cholla_climate_IPM/blob/master/Manuscript/Czachura_climate_demography_JEcology_ACCEPTED.Rnw
• All scripts linked above read in data files or model statements that are stored in this repo. JAGS model output are saved so that they need not be re-run to run the scripts and compile the manuscript.
• The long-term demographic data are included here for convenience but are also published as a stand-alone data package: Miller, T. E. X. (2020). Long-term study of tree cholla demography in the Los Pinos mountains, Sevilleta National Wildlife Refuge. https://doi.org/10.6073/PASTA/DD06DF3F950AFE4A4642306182237D13.
• Please reach out to me (tom.miller@rice.edu) with questions.