3D rat brain atlas

An in-browser visualisation of different structures in the rat brain.

👉 Go to web-app

Preview:

Controls:

• click structures on the right to show/hide them
  • Some bigger structures (like the cerebellum) take a while to load.
• right mouse to pan
• left mouse to rotate
• scroll to zoom

For a much more detailed anatomical ontology (though for the mouse brain), and a more advanced interface, see the Allen Brain Explorer: https://connectivity.brain-map.org/3d-viewer

The data here is from

• Papp et al. 2014
• Kjonigsen et al. 2015

Many thanks to the authors:
Eszter Papp, Lisa Kjonigsen, Evan Calabrese, G. Allan Johnson,
Sveinung Lillehaug, Menno Witter, Jan Bjaalie and Trygve Leergaard.

See data/README.md for how the data was processed.