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tgen
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CovGen
Creates a target specific exome_full192.coverage.txt file required by MutSig
MIT License
21
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Clarify predownload SnpEff dbs, use uncomp. files
#18
ning-y
closed
3 years ago
0
Shift OFS assignment to fix malformed step1 BED
#17
ning-y
closed
3 years ago
0
Make SnpEff multi-threading optional via arg -m
#16
ning-y
opened
3 years ago
0
Add four new previously missing variant classifications
#15
ning-y
closed
3 years ago
0
Parallelized SnpEff causes race condition in downloading databases
#14
ning-y
closed
3 years ago
0
Malformed step1 BED file due to awk's handling of the OFS variable
#13
ning-y
closed
3 years ago
0
SnpEff no longer supports multi-threading
#12
ning-y
opened
3 years ago
0
Missing variant classifications
#11
ning-y
closed
3 years ago
0
CovGen generates a coverage file with ALL 0 values for the coverage
#10
ruhollah2
opened
3 years ago
0
Confusion about covgen input files
#9
llrhys
closed
4 years ago
4
Do not support uncapitalized letter in Reference Genome ?
#8
Tim0thy1
closed
5 years ago
9
Error: Found this base 'Pool' object has no attribute 'starmap' in Reference Genome; Aborting!
#7
YonkoBigMom
closed
5 years ago
4
KeyError: 'chrY'
#6
phuchoang1012
closed
6 years ago
1
snpEff Variant_Classification's do not exist in the mutation type dictionary
#5
sagarutturkar
closed
5 years ago
1
getALTsForTargetsSeqsForMutSig.py error
#4
peterpdu
closed
6 years ago
3
Preprocessing mutation from WGS data for MutSigCV
#3
ysbioinfo
closed
6 years ago
3
reading of BED fails at row 278
#2
huslabgen
closed
7 years ago
4
Update README with Workflow Image
#1
awchrist
closed
7 years ago
0