MultiTypeTree

This is a BEAST 2 package which allows for the inference of multi-type or structured phylogenetic trees. It includes a full set of proposal operators and currently the structured coalescent model, allowing migration rates and sub-population sizes to be inferred from serially-sampled sequence data. The multi-type trees and the operators contained in this package can also be used as the basis for structured population inference under other models.

For further information, please refer to the MultiTypeTree web page.

License

This software is free (as in freedom). With the exception of the libraries on which it depends, it is made available under the terms of the GNU General Public Licence version 3, which is contained in this directory in the file named COPYING.

The following libraries are bundled with MultiTypeTree:

• Google Guava (http://code.google.com/p/guava-libraries/)
• jblas (http://mikiobraun.github.io/jblas/)

That software is distributed under the licences provided in the LICENCE.* files included in this archive.

Work on this project is made possible by generous funding from the Allan Wilson Centre for Molecular Ecology and Evolution.