Covid_meta_analysis

Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics"

Folder structure

ACE2-TMPRSS2 coexpression:

Analysis and plotting scripts as jupyter notebooks to reproduce Figure 1a,b,c,d (and Extended Data Figure 1,2,5; Supplementary Figures 2,13)

Other proteases:

Analysis and plotting scripts as jupyter notebooks to reproduce Figure 2 (and Supplementary Figure 3, Extended Data Figure 6).

Lung meta analysis:

Analysis and plotting scripts as jupyter notebooks to reproduce Figures 3d, Extended Data Figure 9, and Supplementary Figures 4-10.

Lung dataset overview and double positive analysis:

Analysis and plotting script as jupyter notebook to reproduce Figures 3a,c, Extended Data Figure 3, and Supplementary Figure 15.