The branch chipatlas_seq_download now contains a more generic downloader to retrieve files through wget. I am using this file to sequentially download dozens of BigWig and bed.gz files into the webserver. If useful please take a look. @ivirshup @mumichae Chatting later about ways to refine this with code.
https://github.com/theislab/bindome/blob/chipatlas_seq_download/bindome/datasets/chipatlas.py#L151
Tasks
[x] Function to wget download bw/bed from ChIP-atlas, using ID/genome assembly/filetype as input.
[ ] Reuse this function along with a generic .cache directory strategy, to actively retrieve bw/bed from ChIP-atlas into a local directory.
Description
The branch chipatlas_seq_download now contains a more generic downloader to retrieve files through wget. I am using this file to sequentially download dozens of BigWig and bed.gz files into the webserver. If useful please take a look. @ivirshup @mumichae Chatting later about ways to refine this with code. https://github.com/theislab/bindome/blob/chipatlas_seq_download/bindome/datasets/chipatlas.py#L151
Tasks