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theislab
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cellrank_notebooks
Tutorials and examples for CellRank.
https://cellrank.org
BSD 3-Clause "New" or "Revised" License
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Typo
#73
ManuelGander
closed
10 months ago
1
Slightly re-organize tutorials to give nicer previews in hovering
#72
Marius1311
opened
1 year ago
0
Rename `TransportMapKernel` -> `RealTimeKernel`
#71
michalk8
closed
1 year ago
1
Feature/add index
#70
michalk8
closed
1 year ago
1
Update links and use new dataset on figshare
#68
Marius1311
closed
1 year ago
1
Minor improvements for the docs
#69
Marius1311
closed
1 year ago
0
Feature/improve tutorials
#67
Marius1311
closed
1 year ago
2
Fix/remove old code
#66
michalk8
closed
1 year ago
1
Feature/update existing
#65
Marius1311
closed
1 year ago
1
Feature/temporal data
#64
Marius1311
closed
1 year ago
65
Update the getting started tutorial
#63
Marius1311
closed
1 year ago
1
Incorporate review feedback on the getting started tutorial
#62
Marius1311
closed
1 year ago
1
Add a "getting started" tutorial
#61
Marius1311
closed
1 year ago
57
Add a tutorial for gene trend visualization
#60
Marius1311
closed
1 year ago
2
Update with renamed fate probs
#59
Marius1311
closed
1 year ago
1
Introduce a new tutorial about fate probabilities and driver genes.
#58
Marius1311
closed
1 year ago
1
Update with recent scVelo version
#57
Marius1311
closed
1 year ago
1
Add a tutorial about initial and terminal state inference.
#56
Marius1311
closed
1 year ago
72
Bump nbconvert from 5.6.1 to 6.5.1
#55
dependabot[bot]
closed
1 year ago
0
Bump nbconvert from 5.6.1 to 6.3.0
#54
dependabot[bot]
closed
2 years ago
1
Create "Initial & terminal states” tutorial
#52
Marius1311
closed
1 year ago
1
Add an example for the transport map kernel
#53
Marius1311
closed
1 year ago
1
Finish the CytoTRACE tutorial
#51
Marius1311
closed
2 years ago
22
Create “CellRank meets CytoTRACE” Tutorial
#50
Marius1311
closed
2 years ago
0
Package versions not printed in notebooks
#49
Marius1311
closed
1 year ago
1
Feature/pseudotime tutorial
#48
Marius1311
closed
2 years ago
28
Create "CellRank meets pseudotime" tutorial
#47
Marius1311
closed
2 years ago
0
Feature/rna velocity tutorial
#46
Marius1311
closed
2 years ago
1
Create "CellRank meets RNA velocity tutorial"
#45
Marius1311
closed
2 years ago
0
Kernel and estimator tutorial fails in several steps
#42
WeilerP
closed
1 year ago
1
Kernel function `compute_projection` has been replaced
#41
WeilerP
closed
1 year ago
1
CytoTRACE tutorial outdated
#43
WeilerP
closed
1 year ago
6
Update time series tutorial
#44
Marius1311
closed
1 year ago
3
Fix/citations
#40
michalk8
closed
2 years ago
1
Remove plot_schur, update Alpha_corr
#39
michalk8
closed
3 years ago
1
Fix links
#38
michalk8
closed
3 years ago
1
[pre-commit.ci] pre-commit autoupdate
#37
pre-commit-ci[bot]
closed
3 years ago
0
Add Google colab option
#36
michalk8
closed
3 years ago
1
Real time tutorial
#35
Marius1311
closed
3 years ago
41
Update the README
#34
Marius1311
closed
3 years ago
0
Update README to match main repo
#33
Marius1311
closed
3 years ago
0
Update tutorials
#32
Marius1311
closed
3 years ago
17
Add first version of the tutorial
#31
michalk8
closed
3 years ago
3
Switch to GA
#30
michalk8
closed
3 years ago
0
Pancreas basic tutorial - Gene expression trends: Var annotations not found
#29
le-ander
closed
3 years ago
4
Reversed direction of trajectory
#28
sidrahmaryam
closed
3 years ago
4
Plotting smooth gene expression trends along lineages
#27
sidrahmaryam
closed
3 years ago
3
Test xdist again
#26
michalk8
closed
3 years ago
0
Use git lfs
#25
michalk8
closed
4 years ago
4
Regenerate notebooks
#24
michalk8
closed
4 years ago
1
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