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theislab
/
graphcompass
GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
MIT License
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Visium heart dataset
#67
wxicu
opened
2 weeks ago
2
ImportError: cannot import name 'scalar_search_armijo' from 'scipy.optimize.linesearch'
#66
spatts14
closed
2 weeks ago
7
Resolve #61
#65
merelkuijs
closed
2 months ago
0
joblib.externals.loky.process_executor.BrokenProcessPool: A result has failed to un-serialize. Please ensure that the objects returned by the function are always picklable.
#64
spatts14
closed
2 weeks ago
4
added wwl latest package
#63
mayarali
closed
3 months ago
0
ValueError: setting an array element with a sequence.
#62
mairamirza
closed
3 months ago
3
Iterate through list to make a graph per term
#61
spatts14
closed
2 months ago
7
Depth limit
#60
merelkuijs
closed
3 months ago
1
fix numpy-related array error
#59
merelkuijs
closed
4 months ago
1
ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (20,) + inhomogeneous part
#58
spatts14
closed
3 months ago
10
error in np.array()
#57
Bo-UT
closed
5 months ago
4
minor changes to wwl kernel
#56
mayarali
closed
8 months ago
0
minor change to wwl kernel
#55
mayarali
closed
8 months ago
0
Bug/write h5ad
#54
merelkuijs
closed
8 months ago
0
Load datasets using gc.datasets
#53
merelkuijs
closed
8 months ago
1
Account for edge case: no difference between the gene expression matrices of neighbouring nodes
#52
merelkuijs
closed
8 months ago
0
Installation error
#51
Isiiiiii
closed
8 months ago
5
added datasets
#50
mayarali
closed
8 months ago
0
Add a note to the legacy neighborhood analysis notebook
#49
merelkuijs
closed
8 months ago
1
updated distance plot
#48
mayarali
closed
8 months ago
0
Updated python version + Fixed bug
#47
mayarali
closed
9 months ago
0
missing samples in distance.compare_conditions
#46
mihem
closed
8 months ago
4
filtration curve error: igraph cannot get edge ID
#45
mihem
closed
8 months ago
14
Update tutorial notebook
#44
merelkuijs
closed
9 months ago
1
Upload pre-processing notebook
#43
merelkuijs
closed
9 months ago
1
Cannot find the example data used in the MIBITOF_breast_cancer.ipynb
#42
huanlity
closed
9 months ago
3
updated README
#41
mayarali
closed
9 months ago
0
adjusted tutorial notebook
#40
mayarali
closed
9 months ago
1
Removed unnecessary dependencies
#39
mayarali
closed
9 months ago
0
added dataset full tutorial
#38
mayarali
closed
9 months ago
1
Update README.md
#37
merelkuijs
closed
10 months ago
0
added requirements.txt
#36
mayarali
closed
10 months ago
0
Methods + Tutorials
#35
mayarali
closed
10 months ago
1
Bump markdown-it-py from 2.1.0 to 2.2.0
#34
dependabot[bot]
closed
10 months ago
1
Bump black from 22.3.0 to 23.3.0
#33
dependabot[bot]
closed
10 months ago
1
Bump smmap from 5.0.0 to 5.0.1
#32
dependabot[bot]
closed
10 months ago
1
Bump isort from 5.10.1 to 5.11.5
#31
dependabot[bot]
closed
10 months ago
1
Bump mdurl from 0.1.1 to 0.1.2
#30
dependabot[bot]
closed
10 months ago
1
Bump requests from 2.27.1 to 2.31.0
#29
dependabot[bot]
closed
10 months ago
1
Bump flake8 from 4.0.1 to 5.0.4
#28
dependabot[bot]
closed
10 months ago
1
Bump markupsafe from 2.1.1 to 2.1.4
#27
dependabot[bot]
closed
10 months ago
1
Bump ruamel-yaml-clib from 0.2.6 to 0.2.8
#26
dependabot[bot]
closed
10 months ago
1
Bump myst-parser from 0.17.2 to 0.18.1
#25
dependabot[bot]
closed
10 months ago
1
Bump actions/upload-artifact from 3 to 4
#24
dependabot[bot]
closed
10 months ago
1
Bump release-drafter/release-drafter from 5.20.0 to 5.25.0
#23
dependabot[bot]
closed
10 months ago
1
Bump actions/checkout from 3 to 4
#22
dependabot[bot]
closed
10 months ago
1
Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.8.11
#21
dependabot[bot]
closed
10 months ago
1
Bump actions/setup-python from 3 to 5
#20
dependabot[bot]
closed
10 months ago
1
Bump pydocstyle from 6.1.1 to 6.3.0
#19
dependabot[bot]
closed
10 months ago
1
Bump virtualenv from 20.14.1 to 20.16.2
#18
dependabot[bot]
closed
10 months ago
1
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