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theislab
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scvelo
RNA Velocity generalized through dynamical modeling
https://scvelo.org
BSD 3-Clause "New" or "Revised" License
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Add release GitHub action
#1140
michalk8
closed
9 months ago
0
The result is contrary to the expectation, is there a better suggestion?
#1139
Jingle0814
closed
9 months ago
0
Integration of 10x PolyA Data with Fixed RNA Profiling
#1138
ckfromCN
closed
9 months ago
0
scv.tl.velocity_graph(adata) KeyError: 'layout'
#1137
mushan-guan
closed
10 months ago
0
Issue with running filter_and_normalize
#1136
rohitarorayyc
closed
9 months ago
1
Update proportions.py
#1135
Moloch0
closed
9 months ago
1
same scale for scv plots
#1133
yamihn
closed
9 months ago
0
Plots cannot be generated properly
#1132
vasikara17
closed
9 months ago
1
can't set attribute when running scv.pl.velocity_embedding_stream
#1131
Jingle0814
closed
9 months ago
3
scv.tl.velocity_graph(adata)
#1130
vasikara17
closed
11 months ago
0
The arrow directions are opposite in 'dynamical' and 'stochastic' modes.
#1129
danli349
closed
9 months ago
3
velocity_graph fails outside of Jupyter notebook
#1128
josiahbjorgaard
closed
4 months ago
1
Combining Recovering Dynamics and Differential Kinetics
#1126
reneemoerkens
closed
9 months ago
0
Error with matplotlib 3.8.0: unable to import scvelo
#1124
nekonekko
closed
9 months ago
11
Installed from origin/master, scvelo will not load
#1123
jpcartailler
closed
9 months ago
3
Interpretation of phase portraits that occur with inverted velocity vectors
#1122
JahnaviBhaskaran
closed
9 months ago
1
scvelo.pl.velocity_graph.py: ValueError: inhomogenous array
#1121
jwalewski
closed
9 months ago
4
scvelo.pp.moments() can't new thread issue
#1120
hanjun98
closed
9 months ago
1
ValueError when running recover_dynamics
#1119
JuliaChristiaanse
closed
9 months ago
9
issue with modified indices using concatenate
#1118
dxl3742
closed
9 months ago
3
ERROR: XMLRPC request failed [code: -32500]
#1117
zhouzhendiao
opened
1 year ago
0
scv.utils.merge() returns NotImplementedError
#1116
hungms
closed
1 year ago
2
LinAlgError: The data appears to lie in a lower-dimensional subspace of the space in which it is expressed
#1115
zhouzhendiao
closed
9 months ago
2
ImportError: cannot import name 'connect' from 'loompy' (unknown location)
#1114
zhouzhendiao
closed
1 year ago
1
error with scv.tl.rank_dynamical_genes()
#1113
aleenah23
closed
9 months ago
1
Is there a way to label selected genes on the heatmap generated by scv.pl.heatmap?
#1111
ziyangliu93
closed
9 months ago
0
AttributeError: can't set attribute 'categories'
#1110
zhouzhendiao
closed
1 year ago
1
ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (1, 4) + inhomogeneous part.
#1109
GaF123
closed
1 year ago
9
dynamic_model dimensionality problem
#1106
akattapuram-insitro
closed
1 year ago
1
Issue with scv.pl.scatter
#1105
rcohn435
closed
9 months ago
7
Comparison between velocity length and the velocity grid results
#1104
AndiMunteanu
closed
1 year ago
0
Add metabolic labeling inference
#1103
WeilerP
closed
1 year ago
0
Add metabolic labeling inference used for CR2
#1102
WeilerP
closed
1 year ago
0
Update from `python-igraph` to `igraph`
#1101
WeilerP
closed
1 year ago
1
Proportions don't add up to 100%
#1100
LacquerHed
closed
1 year ago
1
python-igraph is renamed to igraph
#1099
szhorvat
closed
1 year ago
0
error plotting velocity_embedding
#1098
johnjeang
closed
1 year ago
1
FIX: scv.tl.rank_dynamical_genes and multidimensional array
#1097
milescsmith
closed
1 year ago
1
Issue with running scv.tl.velocity_graph() function
#1096
ruiqiizhou
closed
1 year ago
2
tl.velocity_graph Keeps Restarting SubProcess Causing an Error To Throw
#1095
DevonJBoland
closed
1 year ago
3
Error with numpy==1.24.3 when computing velocity graph
#1094
karlann
closed
1 year ago
2
valid Loom file
#1093
katarinazosel
closed
1 year ago
0
scv.pl.proportions - percentage labels in the bar chart do not match bars when the clusters start on 1 instead of 0.
#1092
wendelljpereira
opened
1 year ago
1
scv.pl.velocity_embedding_stream() - AttributeError: can't set attribute
#1091
colin893
closed
1 year ago
4
A bug on scv.tl.recover_dynamics
#1089
lzygenomics
closed
1 year ago
7
Rank dynamical genes: Multi-dimensional indexing is no longer supported
#1087
AndiMunteanu
closed
1 year ago
4
Error in scv.tl.recover_dynamics and scv.tl.velocity_graph: The requested array has an inhomogeneous shape after 1 dimensions.
#1084
bsgilgi
closed
1 year ago
2
Filter test warnings
#1083
WeilerP
closed
1 year ago
0
Filter warnings in tests
#1082
WeilerP
closed
1 year ago
0
Update `VELOVI::train`
#1081
WeilerP
closed
1 year ago
0
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