Add Annotation Toggle Panel

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  Description

  This pull request adds a new component called AnnotationTogglePanel to the project. This component allows users to toggle the display of different annotations on the genome display.

Summary

• Added AnnotationTogglePanel component
• Imported AnnotationTogglePanel in App.js
• Added AnnotationTogglePanel to the SearchPanel component
• Added state and logic to handle annotation toggles in AnnotationTogglePanel component
• Updated GensploreView component to pass annotation toggles to GenomeDisplay component
• Created GenomeDisplay component to display annotations based on toggles
• Updated App.js to include AnnotationTogglePanel in the render

Fixes #35.

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[sweep-ai[bot]]

Sandbox Executions

• [X] Ran sandbox for src/components/AnnotationTogglePanel.js. ✓

  Sandbox logs for https://github.com/theosanderson/gensplore/commit/9b0a7c89ed58c9211e460184de093f820b095536

trunk fmt src/components/AnnotationTogglePanel.js || exit 0 1/2 ✓

 ✔ Formatted src/components/AnnotationTogglePanel.js
Re-checking autofixed files...

Checked 1 file
✔ No issues

trunk check --fix --print-failures src/components/AnnotationTogglePanel.js 2/2 ✓

Checked 1 file
✔ No issues

• [X] Ran sandbox for src/App.js. ✗

  Sandbox logs for

trunk fmt src/App.js || exit 0 1/2 ✓

  FAILURES  
 prettier  src/App.js  .trunk/out/oJO6G.yaml
  NOTICES  
 A tool failed to run. You can open the details yaml file for more information.
Checked 0 files
✖ No issues, 1 failure

trunk check --fix --print-failures src/App.js 2/2 ❌ (`1`)

  FAILURES  
 prettier  src/App.js  .trunk/out/MlCBs.yaml
  NOTICES  
 A tool failed to run. You can open the details yaml file for more information.
Checked 1 file
✖ No issues, 1 failure
# .trunk/out/MlCBs.yaml
trunk_cli_version: 1.17.2
title: prettier exited with exit_code=2
report:
  - prettier exited with exit_code=2
  - linter:
      command: |
        /root/.cache/trunk/tools/prettier/3.1.0-a552fdee5ef3daae1274e7dca8183c14/node_modules/.bin/prettier -w src/App.js
      stdin_path: (none)
      run_from: /tmp/trunk-0/sFQXXY/SR2Ryp
      timeout: 10m
      rerun: (cd /tmp/trunk-0/sFQXXY/SR2Ryp; env -i PATH=/root/.cache/trunk/tools/prettier/3.1.0-a552fdee5ef3daae1274e7dca8183c14/node_modules/.bin:/root/.cache/trunk/tools/node/18.12.1-00ae74f39ac4de3ff3c7e3686016ebf3/bin:/root/.cache/trunk/tools/node/18.12.1-00ae74f39ac4de3ff3c7e3686016ebf3:/root/.nvm/versions/node/v18.17.0/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin NODE_PATH=/root/.cache/trunk/tools/prettier/3.1.0-a552fdee5ef3daae1274e7dca8183c14/node_modules HOME=/root /root/.cache/trunk/tools/prettier/3.1.0-a552fdee5ef3daae1274e7dca8183c14/node_modules/.bin/prettier -w src/App.js)
      affects_cache:
        - package.json
      direct_configs:
        []
      exit_status: exited
      exit_code: 2
      stdout: (none)
      stderr: |
        [error] src/App.js: SyntaxError: Unexpected token (472:11)
        [error]   470 |        472 |           
        [error]       |           ^
        [error]   473 |       >
        [error]   474 |         Customize appearance
        [error]   475 |       
    parser: |
      (none)

• [X] Ran sandbox for src/App.js. ✓

  Sandbox logs for https://github.com/theosanderson/gensplore/commit/44ecd3f565d6d219efbf343f6f1dd76532886fc2

trunk fmt src/App.js || exit 0 1/2 ✓

 ✔ Formatted src/App.js
Re-checking autofixed files...

Checked 1 file
✔ No issues

trunk check --fix --print-failures src/App.js 2/2 ✓

Checked 1 file
✔ No issues

• [X] Ran sandbox for src/App.js. ✓

  Sandbox logs for

trunk fmt src/App.js || exit 0 1/2 ✓

Checked 1 file
✔ No issues

trunk check --fix --print-failures src/App.js 2/2 ✓

Checked 1 file
✔ No issues

• [X] Ran sandbox for src/components/GenomeDisplay.js. ✓

  Sandbox logs for https://github.com/theosanderson/gensplore/commit/60e8d7afa39791c2b0537b6b5b738adf4cff895d

trunk fmt src/components/GenomeDisplay.js || exit 0 1/2 ✓

 ✔ Formatted src/components/GenomeDisplay.js
Re-checking autofixed files...

Checked 1 file
✔ No issues

trunk check --fix --print-failures src/components/GenomeDisplay.js 2/2 ✓

Checked 1 file
✔ No issues

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Apply Sweep Rules to your PR?

• [ ] Apply: All new business logic should have corresponding unit tests.
• [ ] Apply: Refactor large functions to be more modular.
• [ ] Apply: Add docstrings to all functions and file headers.

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Name	Status	Preview	Comments	Updated (UTC)
genbank-view	✅ Ready (Inspect)	Visit Preview	💬 Add feedback	Nov 24, 2023 1:21pm