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thewtex
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ngff-zarr
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
https://ngff-zarr.readthedocs.io
MIT License
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ENH: Export Zarr Metadata classes from package
#93
thewtex
closed
1 week ago
0
ci updates
#92
thewtex
closed
1 week ago
0
Enable macOS tests in Pixi CI testings
#91
thewtex
opened
1 week ago
0
ENH: Add pixi CI configuration
#90
thewtex
closed
1 week ago
0
BUG: Fix CI macos-14 matrix exclusion logic
#89
thewtex
opened
1 week ago
0
scale order
#88
thewtex
closed
1 week ago
0
CI doesn't run any tests
#87
btbest
opened
2 weeks ago
1
BUG: Add test for to_multiscales
#86
btbest
opened
2 weeks ago
2
Fix usages of Sets
#85
btbest
closed
1 week ago
0
DOC: Add links to other packages
#84
thewtex
closed
1 month ago
0
ENH: Update tifffile constraint for zarr file handle fix
#83
thewtex
closed
1 month ago
0
BUG: Add tifffile version constraint
#82
thewtex
closed
1 month ago
0
DOC: Add itk docs
#81
thewtex
closed
1 month ago
0
DOC: Add Python Array API docs
#80
thewtex
closed
1 month ago
0
quick start
#79
thewtex
closed
1 month ago
0
DOC: Use pixi in the development documentation
#78
thewtex
closed
1 month ago
0
pixi
#77
thewtex
closed
1 month ago
0
ENH: Test Python 3.12 in CI
#76
thewtex
closed
1 month ago
0
ENH: Add cli --help colors
#75
thewtex
closed
3 months ago
0
ENH: Bump itkwasm-downsample to support more label image types
#74
thewtex
closed
4 months ago
0
BUG: Detect .ome.zarr as supported by NGFF_ZARR
#73
thewtex
closed
6 months ago
0
Cucim reader
#72
thewtex
opened
6 months ago
1
ENH: Test macOS Apple Silicon (ARM) in CI
#71
thewtex
closed
1 month ago
1
Enable kvikio GDSStore in cli
#70
thewtex
opened
6 months ago
1
Add cucim OpenSlideIO API support to the CLI
#69
thewtex
opened
6 months ago
1
DOC: Document CUDA acceleration
#68
thewtex
closed
6 months ago
4
Cli io wasm
#67
thewtex
closed
7 months ago
0
DOC: Add some documentation for current methods
#66
thewtex
closed
7 months ago
1
ENH: Default method is ITKWASM_GAUSSIAN
#65
thewtex
closed
7 months ago
0
DOC: Format to_ngff_zarr for myst / autodoc2
#64
thewtex
closed
7 months ago
0
BUG: Pass correct kwarg to LocalCluster for memory_limit
#63
thewtex
closed
7 months ago
0
DOC: myst, autodoc2 supported formatting for to_multiscales, to_ngff_…
#62
thewtex
closed
7 months ago
0
Itkwasm downsample
#61
thewtex
closed
7 months ago
1
Why are all zero after conversion in scale0?
#60
maoyuanpeng
opened
8 months ago
1
BUG: Reset image.computed_callbacks after calling
#59
thewtex
closed
9 months ago
0
BUG: Support reading and writing an OME-Zarr created by omero-zarr
#58
thewtex
closed
9 months ago
0
ENH: Clean up scale cache stores before process exit
#57
thewtex
closed
9 months ago
0
Sigma
#56
thewtex
closed
9 months ago
0
ngff_zarr.to_ngff_zarr: "ValueError: path containing '.' or '..' segment not allowed"
#55
m-albert
closed
9 months ago
1
Add itkwasm-downsample backend
#54
thewtex
closed
7 months ago
0
dask-image dependency missing?
#53
tischi
closed
7 months ago
2
Expose scale factors to the cli
#52
d-v-b
closed
1 year ago
1
BUG: Support dim dict scale factors in _downsample_dask_image
#51
thewtex
closed
1 year ago
0
Scipy py cookie
#50
thewtex
closed
1 year ago
0
Empty `multiscales/multiscaleTransformations` metadata field
#49
tbirdso
closed
9 months ago
1
Dask task graphs are huge (non-performant) for large data
#48
GFleishman
opened
1 year ago
11
More dimension_separator="/" added, so napari can open big data as well
#47
GFleishman
closed
1 year ago
0
nested separator in to_ngff_zarr, fixed napari display problem
#46
GFleishman
closed
1 year ago
2
Image data not displayed in napari
#45
GFleishman
closed
1 year ago
1
Document anti-aliasing filters
#44
thewtex
closed
7 months ago
0
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