tidyomics genomics-todos issues

tidyomics / genomics-todos

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

`biocmask`: data masks for S4 objects, especially SummarizedExperiment

#16 mikelove opened 2 months ago
1
Transfer of plyranges to tidyomics organisation

#15 sa-lee closed 7 months ago
3
tidyomics project-wide challenge: add more cross-package tutorials

#14 mikelove opened 9 months ago
1
`plyranges`: provide convenience function `add_num_overlaps` which combines `mutate` and `count_overlaps`

#13 mikelove closed 6 months ago
1
`plyranges`: add support for `min.gapwidth` to `reduce_ranges`

#12 mikelove opened 1 year ago
1
Example of scATAC-seq pseudobulk analysis for differential accessibility testing

#11 jeremymsimon opened 1 year ago
12
`plyranges`: facilitate adding metadata columns via `join_mcols_*`

#10 mikelove opened 1 year ago
7
use `pillar` to add aesthetics to the columns of the `tibble` interface of `tidySCE`, `tidyseurat`, `tidySE`

#9 stemangiola opened 1 year ago
2
`plyranges`: `group_by()` then `range()`

#8 mikelove closed 1 year ago
1
Write/teach workshop on bootRanges

#7 mikelove opened 1 year ago
0
modernize tidy transcriptomics and genomics with dplyr > 1.0.0 and new tidyr

#6 stemangiola opened 1 year ago
5
Example of ATAC-seq processing combining plyranges and tidybulk/tidySummarizedExperiment

#1 mikelove opened 1 year ago
0
`plyranges`: `join_overlap` but also include distance column

#2 mikelove opened 1 year ago
1
New package idea, facilitate easily: genomic ranges |> filter_by_overlaps(window) |> plotgardener or Gviz

#5 mikelove opened 1 year ago
18
any of the `plyranges` "good-first-issue" issues

#3 mikelove opened 1 year ago
13
Speed up `group_by` operations in `plyranges`

#4 mikelove opened 1 year ago
38