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titipata
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pubmed_parser
:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
http://titipata.github.io/pubmed_parser/
MIT License
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Question about Original XML
#96
dsdoermann
closed
1 month ago
3
Error using parse_pubmed_xml
#95
sublimotion
opened
3 years ago
5
copyedits to README.md
#94
Daniel-Mietchen
closed
3 years ago
1
some copyedits to CONTRIBUTING.md
#93
Daniel-Mietchen
closed
3 years ago
1
Fix: Improved serialzation
#92
JovanVeljanoski
closed
3 years ago
0
ModuleNotFoundError: No module named 'pubmed_parser'
#91
alonasorochynska
closed
1 month ago
3
[pubmed oa] Parse conflict of interest statements
#90
simonwoerpel
closed
3 years ago
10
Fix subjects xpath in parse_pubmed_xml. Fixes #87
#89
thomascpan
closed
4 years ago
0
Fix subjects xpath in parse_pubmed_xml. Fixes #76
#88
thomascpan
closed
4 years ago
0
parse_pubmed_xml does not return "subjects"
#87
thomascpan
closed
4 years ago
0
Reference fixes
#86
kthyng
closed
4 years ago
1
Fix for one final pmid.text.strip().
#85
patrusso2
closed
4 years ago
1
Minor edits - JOSS pre-publication
#84
majensen
closed
4 years ago
2
Handle field.text being None
#83
patrusso2
closed
4 years ago
1
Missing details in API docs
#82
tleonardi
closed
4 years ago
1
Fixed in-text citation to Tang et al.
#81
tleonardi
closed
4 years ago
1
Create test function for Pubmed Parser
#80
titipata
closed
4 years ago
3
Contributing guidelines are missing
#79
tleonardi
closed
4 years ago
3
Various changes/fixes
#78
tleonardi
closed
4 years ago
2
JOSS paper text
#77
tleonardi
closed
4 years ago
2
Missing dependencies
#76
tleonardi
closed
4 years ago
1
SyntaxWarning raised during import
#75
tleonardi
closed
4 years ago
2
Question about downloading PubMed OA figures
#74
pidugusundeep
closed
4 years ago
6
fixed bugs where methods were being called on NoneType objects
#73
nicford
closed
4 years ago
1
Add community guideline
#72
titipata
closed
4 years ago
1
JOSS submission
#71
titipata
closed
4 years ago
0
Update README, place holder for JOSS submission
#70
titipata
closed
4 years ago
1
Allow parsing DOI/PMID from PubmedData/ArticleIdList
#69
titipata
closed
4 years ago
0
Parsing DOI Medline XML
#68
sakrifor
closed
4 years ago
7
change parse_name_df to parse_affil_df
#67
tanganyao
closed
4 years ago
0
XMLSyntaxError
#66
musiccccc
closed
5 years ago
0
pip3 install wget
#65
0BN0
closed
4 years ago
2
medline xml equivalent for "parse_pubmed_references"?
#64
huminpurin
closed
4 years ago
10
Revert paragraphs xpath change
#63
kjhenner
closed
5 years ago
0
Update readme to include ref year
#62
kjhenner
closed
5 years ago
0
retrieve year from pubmed oa refs
#61
kjhenner
closed
5 years ago
3
Update pubmed_oa_parser.py
#60
soupstandstop
closed
4 years ago
2
Parse Pubmed OA Paragraph
#59
soupstandstop
closed
4 years ago
9
Pubdate not returning correct year
#58
MatthewDeitz
closed
4 years ago
4
parse publication date
#57
yak1r
closed
5 years ago
5
Fix online parser to parse given PMID
#56
titipata
closed
4 years ago
1
XMLSyntaxError
#55
deakkon
closed
6 years ago
4
shorten installation steps by using pip
#54
bluenex
closed
6 years ago
0
ImportError: libicui18n.so.56: cannot open shared object file: No such file or directory
#53
deakkon
closed
4 years ago
3
README: explicitly change into the source directory
#52
vbatts
closed
6 years ago
0
Abstract partically extracted
#51
deakkon
closed
4 years ago
7
feature request: MeSH IDs
#50
pseudomonas
closed
6 years ago
4
"cannot use absolute path on element" when passing xml as string instead of fileobject
#49
rajasankar
closed
6 years ago
1
python-2.7 import error: No module named 'request'
#48
uludag
closed
6 years ago
4
Possible error while parsing structured abstracts.
#47
RudrakshTuwani
closed
7 years ago
23
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