tleonardi nanocompore issues

tleonardi / nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

https://nanocompore.rna.rocks

GNU General Public License v3.0

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issues

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ref kmer and position of modification

#230 keenhl opened 3 months ago
1
Direction of change in methylation

#229 keenhl opened 3 months ago
1
sharkfin plot too many data points and difficult to visualize

#228 Rohit-Satyam opened 5 months ago
1
Fixed numpy.float depreciated behaviour

#227 lmulroney opened 5 months ago
0
Parameters recommendation to analyse SARS-CoV-2 data generated us Oxford Nanopore DRS protocol

#226 Rohit-Satyam closed 5 months ago
2
numpy' has no attribute 'float'.

#225 Rohit-Satyam closed 5 months ago
3
db type is dbm.gnu, but the module is not available

#224 villegmb opened 7 months ago
4
Steps to make Nanocompore Work

#223 Rohit-Satyam closed 10 months ago
1
Nanocompore SampComp stuck at 0%

#222 sidizhao opened 12 months ago
8
SystemError: null argument to internal routine

#221 kwonej0617 opened 1 year ago
7
Problems with save_to_bed. And questions with bed file annotation

#220 XqKang closed 1 year ago
1
nanocompore sampcomp output question.

#219 fgfrost closed 1 year ago
5
nanocompore-sampcomp-References found in index: 0

#218 XqKang closed 1 year ago
2
A question about the result

#217 Tomcxf opened 1 year ago
1
miCLIP dataset

#216 kwonej0617 closed 1 year ago
2
Bump joblib from 0.17.0 to 1.1.1

#215 dependabot[bot] opened 1 year ago
0
returns numpy error while intsalling nanocompore on Ubuntu 22.04

#214 annapopova-scripps closed 1 year ago
2
nanocompore to be used for SHAPEseq data

#213 lpantano closed 1 year ago
1
Request for demo data & getting ValueError: 'read_name' is not in list when running nanocompore eventalign_collapse with nanopolishComp data

#212 kwonej0617 closed 1 year ago
11
Issues on reproducing the synthetic oligo results from the nanocompore paper

#211 loganylchen closed 1 year ago
3
cluster_counts interpretation

#210 sunsetyerin closed 1 year ago
1
plot position is giving an error

#209 Muhammad5577 closed 1 year ago
5
dbm.error: db file doesn't exist; use 'c' or 'n' flag to create a new db

#208 sunsetyerin closed 1 year ago
21
SampCompDB error

#207 rezarahman12 opened 1 year ago
1
Script for generating the "sharkfin plot of the p-values compared with Log Odds Ratio"

#206 sbridgett closed 1 year ago
6
samcomp

#205 rezarahman12 closed 1 year ago
0
Where is the fold change value

#204 JeremyQuo closed 1 year ago
3
eventalign_collapse error

#203 rezarahman12 closed 1 year ago
9
About SK1 transcriptome reference and m6A sites for Yeast

#202 Derryxu opened 1 year ago
1
nanocompore sampcomp defunct

#201 zhongzhd closed 2 years ago
0
'event_l' referenced before assignment

#200 peaceben closed 1 year ago
4
SampComp error

#199 rania-o opened 2 years ago
5
The problem in the output file

#198 JeremyQuo opened 2 years ago
1
IndexError during Eventalign_collapse

#197 Tomcxf closed 2 years ago
5
The result database does not contain metadata

#196 ynren1020 opened 2 years ago
3
Formatting issue on docs

#195 mbhall88 opened 2 years ago
0
Code and data for Sup. Figure 10

#194 mbhall88 closed 2 years ago
2
SampCompDB plot position error

#193 samir-watson opened 2 years ago
2
Transition to SQLite backend - use transcript-specific databases

#192 hendrikweisser opened 2 years ago
0
swarmplot to visualize each replicate

#191 wososa closed 3 years ago
2
Release v1.0.4

#190 tleonardi closed 3 years ago
0
Improved logging/error handling in Whitelist

#189 tleonardi closed 3 years ago
0
About nominal p-values

#188 wososa closed 3 years ago
1
About GLMM p-value peaks passing 0.01

#187 wososa closed 3 years ago
2
Is there CLI provision for transcript exclude list?

#186 DrOllyGomez opened 3 years ago
1
Dwell time scaling

#185 tleonardi opened 3 years ago
0
Ongoing transition to DB backend (SQLite)

#184 hendrikweisser opened 3 years ago
11
DataStore: implement '__store_kmer'

#183 hendrikweisser closed 3 years ago
0
Version 1.0.3 is shown as version 1.0.2

#182 wososa closed 3 years ago
1
Release 1.0.3

#180 tleonardi closed 3 years ago
0