tmcd82070 / CAMP_RST

R code for CAMP rotary screw trap platform
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Task 2.6.b #21

Closed jasmyace closed 9 years ago

jasmyace commented 10 years ago

"In the daily production summary CSV file, add the includeCatchID field such that it provides a 'yes' or 'no' notation."

jasmyace commented 10 years ago

Within function F.get.catch.data, pulled variable includeCatchID from query-derived Access table TempSamplingSummary and joined via function merge to dataframe catch, which has the bulk of the rest of the catch information utilized in this function via variables trapPositionID, EndTime, and ProjID. Ultimately pushed (new and improved) dataframe catch to passage as list tmp.df, from which its dataframe element catch.df is further manipulated.

Eventually, includeCatchID enjoys the ride to function F.est.passage, where it ultimately is included into baseTable.csv output. Most batchDates in baseTable.csv receive either an includeCatchID value of 1 or 2, where 1 presumably means 'yes,' and 2 means 'no.' In some cases however, no value of includeCatchID is found, resulting in an NA for that batchDate. These appear to concur with stretches of multiple days for which counts must be imputed, except for the last in the series.

Finally, within the dataset obtained via use of variable values river <- 'american'
site <- 57000 # American River site id taxon <- 161980 run <- 3 min.date <- "2013-01-01" max.date <- "2013-06-30" by <- "day" output.file <- paste0("../outputs/",river,"/",by,"/",river) by.lifestage <- FALSE
ci <- TRUE output.type <- "odt"
from <- "Trent McDonald, Ph.D., WEST Incorporated" to <- "Doug Threloff, USFWS CAMP Coordinator" return.addr <- "FISH AND WILDLIFE SERVICE!USFWS Caswell State Park Office!1234 Abbey Rd.!Caswell, California 96080!(530) 527-3043, FAX (530) 529-0292",

three batchDates come back with two distinct records, i.e., a 1 and an NA for variable includeCatchID. I haven't investigated this too much, but very preliminarily, it looks like a few records that have a value for includeCatchID in table TempSamplingSummary don't have corresponding records in table TempSumUnmarkedByTrap_Run_Final.

jasmyace commented 9 years ago

The request for inclusion of this field was rescinded by Doug (and Connie).