BacSeq: A user-friendly automated pipeline for whole-genome sequence analysis of bacterial genomes
Introduction
BacSeq is an all-in-one pipeline for bacterial genome analysis. The software contained several Bioinformatics tools for quality control of raw reads, genome assembly and quality assessments, genome annotation, downstream analysis, and comparative genomic analysis. BacSeq is available for both short-read and long-read sequencing data and the visualization and reports will be exhibited on the HTML page.
Workflows
2.Select directory that include with this files pattern
3.De novo assembly page
4.Downstream analysis page
5.Comparative analysis page
6.Visualization and report page
- Button will be enabled to click when each program runs successfully.
- When the user clicks the button on this page, the program will open an output directory.
Input
Files that contains filename_1.fastq.gz and filename_2.fastq.gz
Do not use files containing filename_R1.fastq.gz or filename_001.fastq.gz
Output
Outputs are stored in the software/output directory
Authors
- Komwit Surachat
- E-mail: komwit.s@psu.ac.th
- Arnon Chukamnerd
- E-mail: arnonchukamnerd@hotmail.com
- Kongpop Jeenkeawpiam
- E-mail: kongpop.je@gmail.com
Developed by Genome InFormaTics (GIFT)
Prince of Songkla University, Thailand