clinical-agent

This project is designed for a simple LLM agent with tools on a clinical knowledge graph in Neo4j.

Setup

1. Download and restore the Clinical database dump.

2. Set environment variables in .env.

3. Run the following command:

docker compose up 

Example questions

• What are associated foods with cancer?
• What are known clinically relevant gene variants for gene CLN3?
• In which tissues are expressed proteins associated with prostate carcinoma?

Todo

• Better entity mapping from input to database (Using a combination of keyword search and/or biomedical text embeddings)
• More tools

Contributions

Contributions are welcomed