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tomazc
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iCount
iCount, protein-RNA interaction analytics
http://icount.biolab.si
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star: Add optional arguments to control memory usage, related to #134
#165
tomazc
closed
6 years ago
1
Error while running iCount peaks
#164
raflynn
closed
6 years ago
6
genomes: Make release of type str
#163
JureZmrzlikar
closed
7 years ago
1
tests: Set random seed
#162
JureZmrzlikar
closed
7 years ago
1
genomes: Add GENCODE as source of genome and annotation
#161
JureZmrzlikar
closed
7 years ago
5
xlsites: Minor fix in processing bam file
#160
JureZmrzlikar
closed
7 years ago
1
tests: e2e tests framework and rnamaps example
#159
JureZmrzlikar
closed
7 years ago
1
Definitions from 'summary' tool
#158
raflynn
opened
7 years ago
1
Memory Issue - Running 'peaks' tool
#157
raflynn
opened
7 years ago
0
clusters: Cluster peaks then quantify using sites
#156
tomazc
closed
7 years ago
1
installation
#155
raflynn
closed
7 years ago
2
release: Register and upload package on PyPI
#154
tomazc
closed
7 years ago
1
docs: Fix MANIFEST.in to exclude presentations
#153
tomazc
closed
7 years ago
1
docs: Add Crick presentation, minor changes to tutorial
#152
tomazc
closed
7 years ago
0
clusters: Fix saving of gziped files
#151
JureZmrzlikar
closed
7 years ago
1
annotate: Fix tests
#150
tomazc
closed
7 years ago
1
docs: minor changes to tutorial
#149
tomazc
closed
7 years ago
0
docs: Improve tutorial example, add matplotlib
#148
tomazc
closed
7 years ago
1
xlsites: improve memory efficiency
#147
JureZmrzlikar
closed
7 years ago
1
metrics: Make all analysis return metrics objects
#146
JureZmrzlikar
closed
7 years ago
1
fastq: additional refactoring
#145
JureZmrzlikar
closed
7 years ago
2
doc: Add docs on docker, virtualbox, contrib, lzma and bz2 dev libs
#144
tomazc
closed
7 years ago
1
cli: Fix output of iCount --version in case of missing folders, closes #142
#143
JureZmrzlikar
closed
7 years ago
2
iCount --version polluted by TMP_ROOT creation message
#142
JureZmrzlikar
closed
7 years ago
0
demultiplex: refactor and fix random barcode appending
#141
JureZmrzlikar
closed
7 years ago
5
iCount demultiplex does not put random barcodes in headers of demultiplexed fastqs
#140
JureZmrzlikar
closed
7 years ago
0
Support Prokaryotic Genomes
#139
Faitero
opened
7 years ago
5
ensembl: Support versions up to 88.
#138
JureZmrzlikar
closed
7 years ago
1
Small fixes
#137
JureZmrzlikar
closed
7 years ago
2
xlsites: Fix generation of 'skipped file'
#136
JureZmrzlikar
closed
7 years ago
1
rnamaps: Add normalization, closes #21
#135
JureZmrzlikar
closed
7 years ago
4
Support custom arguments in mapstar and indexstar
#134
JureZmrzlikar
opened
7 years ago
0
cli: Improve descriptions, resolves #131
#133
JureZmrzlikar
closed
7 years ago
3
segment: Support GENCODE annotations, resolves #125
#132
JureZmrzlikar
closed
7 years ago
1
iCount mapstar do not accept "--runThreadN" comand
#131
Faitero
closed
7 years ago
2
Problems connecting to ENSEMBL FTP server
#130
Faitero
opened
7 years ago
4
fixes, closes #121 #122 #126 #127
#129
JureZmrzlikar
closed
7 years ago
7
docs: Add FAQ section, closes #124
#128
tomazc
closed
7 years ago
1
STAR index
#127
Faitero
closed
7 years ago
1
clusters: Output issue
#126
nebo56
closed
7 years ago
0
segment: Add suport for GENCODE annotation
#125
tomazc
closed
7 years ago
7
peaks: [OSError] 28
#124
nebo56
closed
7 years ago
2
genome: Specify chromosome
#123
Faitero
closed
7 years ago
1
peaks: Wrong BED format for identified cross-linked sites
#122
nebo56
closed
7 years ago
2
species: Retrieval of species release
#121
Faitero
closed
7 years ago
1
publish on PyPI
#120
tomazc
closed
7 years ago
0
docs: Render on RTD
#119
tomazc
closed
7 years ago
0
setup: Improve packaging and testing
#118
dblenkus
closed
7 years ago
4
repo: Make repo public, closes #59
#117
tomazc
closed
7 years ago
0
docs: Write tutorial, handle comments in module docstrings
#116
tomazc
closed
7 years ago
0
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