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vsearch
Versatile open-source tool for microbiome analysis
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Enable building on any 64-bit little-endian architecture
#566
mr-c
opened
6 days ago
3
Segfault with derep_id on both strands
#565
torognes
opened
1 week ago
1
--fastq_ascii and --fastq_qmax must be no more than 126
#564
goodcouscous
opened
3 weeks ago
1
unexpected behaviour - v 2.28 sintax chooses first sequence when not classifiable
#563
givdieri
opened
1 month ago
4
centroid sequence length after clustering is different from input sequences' length which are all equal to 200n
#562
Tony-Makdissy
closed
1 month ago
2
vsearch.1: typo choosen -> chosen.
#561
emollier
closed
1 month ago
0
Adapt for RISC-V
#560
torognes
opened
2 months ago
2
USEARCH wants to go open-source?
#559
cjfields
closed
2 months ago
3
usearch_global command eats my sample IDs
#558
marchoeppner
closed
2 months ago
3
is there a major vote fraction parameter of a vsearch clustered consensus sequence?
#557
ShannonDaddy
closed
2 months ago
5
Can't run static binary
#556
jtremblay
closed
3 months ago
3
Problem building
#555
jtremblay
closed
3 months ago
1
--weak_id not working
#554
dleopold
closed
2 months ago
8
Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch
#553
timz0605
closed
2 months ago
2
Question about the query file of -usearch_global command when creating OTU tables
#552
magicprotoss
closed
2 months ago
6
Obtaining the expected error for each read
#551
timothevanmeter
closed
6 months ago
4
Fix warnings reported by Lintian
#550
torognes
closed
5 months ago
2
Consequences of using vsearch on NovaSeq data
#549
slambrechts
closed
1 month ago
4
missing userfields options
#548
frederic-mahe
opened
7 months ago
0
Issue related to usearch_global match
#547
NkaziN
closed
7 months ago
4
vsearch --top_hits_only --maxaccepts 1 returns sometimes 2 values
#546
greboul
closed
7 months ago
6
vsearch --usearch_global not showing "full alignment" instead only the segment pair
#545
gbbio
closed
7 months ago
3
maxseqlength is not supported by uchime_denovo command
#544
petaripenev
closed
7 months ago
6
--makeudb_usearch truncates fasta headers
#543
dleopold
closed
7 months ago
3
clean-up stale branches
#542
frederic-mahe
closed
7 months ago
1
Issue encountered when using vsearch --usearch_global to generate OTU frequency table
#541
timz0605
closed
5 months ago
3
src/derepsmallmem.cc: fix minor typo.
#540
emollier
closed
7 months ago
1
more compile-time checks
#539
frederic-mahe
closed
7 months ago
2
how to detect matches containing many ambiguous symbols?
#538
frederic-mahe
closed
8 months ago
1
--uchime_denovo takes abundance information into account
#537
frederic-mahe
closed
8 months ago
1
from fasta files to an OTU table
#536
frederic-mahe
closed
8 months ago
1
control of 2 separate randseed events in sintax
#535
todd-desantis
opened
8 months ago
10
forward read trimming and filtering (Minardi et al. 2021)
#534
frederic-mahe
closed
9 months ago
1
fastq_stripleft when the resulting length is null?
#533
frederic-mahe
closed
9 months ago
0
sintax output is sometimes 4 columns and other times 5 columns
#532
todd-desantis
closed
8 months ago
3
compilation warning with ar: 'u' modifier ignored since 'D' is the default
#531
frederic-mahe
closed
7 months ago
2
always report the rightmost match if multiple equivalent occurrences are present in target sequence? No.
#530
frederic-mahe
closed
6 months ago
5
Update log file output for --chimeras_denovo command
#529
torognes
closed
7 months ago
1
add a DEBUG compilation option
#528
frederic-mahe
closed
10 months ago
4
fastq_mergepairs: merging stats should be written to log file if --log is used
#527
frederic-mahe
closed
12 months ago
2
Too many "alignment score too low, or score drop too high" during pair-end merge compared with FLASH
#526
billzt
closed
1 year ago
5
Build errors with GCC 13 on Debian 13
#525
torognes
closed
10 months ago
8
Option to output the reason why merging failed
#524
torognes
opened
1 year ago
0
maxseqlength is not supported by makeudb_search command
#523
javieriserte
closed
10 months ago
4
Why FASTQ quality value above qmax is treated as Fatal error?
#522
billzt
opened
1 year ago
6
--sizein seems having no effect in vsearch --usearch_global
#521
billzt
closed
11 months ago
9
Windows binaries: working with compressed files
#520
frederic-mahe
closed
2 months ago
5
appending sample names to fasta headers incomplete
#519
givdieri
closed
1 year ago
1
EE: document the meaning of expected error values
#518
frederic-mahe
closed
1 year ago
2
Include rows of OTUs with no mapped reads in OTU tables
#517
torognes
closed
7 months ago
2
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