tpq propr issues - Githubissues

tpq / propr

[OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data

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issues

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Fix select argument handling for vector input

#67 audrey-bollas opened 19 hours ago
0
Problem using select?

#66 audrey-bollas opened 21 hours ago
1
fix bugs related to updateCutoffs

#65 suzannejin closed 1 month ago
0
modify runNormalization so that it can handle other thetas

#64 suzannejin closed 1 month ago
0
fix error in runNormalization

#63 suzannejin closed 1 month ago
0
graflex: avoid compute permutations when odds ratio is NaN and sort resulting graflex by odds ratio

#62 suzannejin closed 1 month ago
0
only name columns and rows when needed in results_to_matrix

#61 suzannejin closed 1 month ago
0
reorganize results_to_matrix so that it can take given features

#60 suzannejin closed 1 month ago
0
fix bug in results_to_matrix

#59 suzannejin closed 1 month ago
0
add function results_to_matrix()

#58 suzannejin closed 2 months ago
0
corrected bug: call object@Fivar instead of Fivar

#57 suzannejin closed 2 months ago
0
update README with getters. And added more test to getMatrix

#56 suzannejin closed 2 months ago
0
Update README.md

#55 Jayanth-kumar5566 closed 2 months ago
1
change NULL arguments to NA

#54 suzannejin closed 2 months ago
0
update v5.1.3: correct tails = 'both' to symmetric two-sided FDR test

#53 suzannejin closed 2 months ago
0
update description package versin

#52 suzannejin closed 2 months ago
0
further speed up graflex

#51 suzannejin closed 2 months ago
0
speed up graflex again

#50 suzannejin closed 2 months ago
0
change 'tails' argument to take 'right' and 'both'

#49 suzannejin closed 2 months ago
0
update readme

#48 suzannejin closed 2 months ago
0
How do we download and install?

#47 mpage21 closed 3 months ago
2
[feature] Added accesory functions like getAdj and optimized graflex

#46 suzannejin closed 2 months ago
0
New vignettes

#45 SilasK opened 6 months ago
2
[fix] GREA is too slow, improve the code

#44 suzannejin closed 2 months ago
0
Interests about python implementation

#43 HelloWorldLTY opened 7 months ago
6
Update to version 5.0.1

#42 suzannejin closed 11 months ago
0
changed pcor.bshrink so that the alr columns are 0 instead of NaN, otherwise the updateCutoff() function will give NaNs

#41 suzannejin closed 11 months ago
0
any option for robust or weighted metrics?

#40 rsiani closed 1 year ago
2
fix some bugs in pcor.bshrink related code

#39 suzannejin closed 12 months ago
1
[Question] Revisiting Multi-omic Analysis

#38 mirpie opened 1 year ago
0
[Question] Understanding why CLR -> Correlation is not compositionally-valid

#37 jolespin opened 1 year ago
1
Partial correlations with basis shrinkage

#36 suzannejin closed 1 year ago
0
aldex.glm expects different input in propr vs aldex2 packages, leading to errors when both are loaded

#35 rrohwer opened 2 years ago
0
Question about implementing ALR with ERCC92 spike ins

#34 jolespin opened 2 years ago
0
BUG REPORT lr2cor "r" column goes beyond (-1, 1)

#33 tpq opened 3 years ago
0
Correct FDR calculation for partial correlation

#32 suzannejin closed 2 years ago
1
Add partial correlations to propr

#31 danfulop closed 2 years ago
14
Question about the propr `select` argument

#30 JemmaSun opened 3 years ago
3
Add Rcpp counting functions

#29 mooreryan closed 3 years ago
1
Set propr permutations to zero inside updateCutoffs (#27)

#28 mooreryan closed 3 years ago
0
`updateCutoffs.propr` speedup

#27 mooreryan closed 3 years ago
2
Error in propr(counts, metric = "rho", ...) : Data may not contain negative measurements.

#26 JemmaSun closed 3 years ago
2
Question about significant proportionalities

#25 alopgar opened 3 years ago
3
Question about scaling propr to very large data sets (Part 2)

#24 sapuizait opened 3 years ago
11
Question about differences between propr versions

#23 suzannejin opened 3 years ago
6
Question about centered log-ratio transformation

#22 li000678 closed 3 years ago
2
Question about dimension reduction for single-cell and other data

#21 SilasK opened 3 years ago
3
Meaning of lrv and interpreting negative rho values...

#20 lix2k3 closed 3 years ago
1
Question about scaling propr to very large data sets (Part 1)

#19 suzannejin opened 4 years ago
1
Question about lr2glm model.matrix argument

#18 MeggyC opened 4 years ago
2