issues
search
trev-f
/
SRAlign
a flexible pipeline for short read alignment to a reference
MIT License
0
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Issue #34: Specify entry point for Docker containers
#35
raqmejtru
closed
1 year ago
0
NXF_CONTAINER_ENTRYPOINT_OVERRIDE defaults to false as of Nextflow v 22.08.0
#34
raqmejtru
closed
1 year ago
6
DeepTools bamCompare causes an eror when only one dataset
#33
t-f-freeman
opened
2 years ago
0
Add example outputs
#32
trev-f
opened
2 years ago
0
Specify paired or single end reads in alignments input design file
#31
trev-f
opened
2 years ago
0
Standardize module naming
#30
trev-f
closed
2 years ago
0
Use remote files for test
#29
trev-f
closed
2 years ago
0
Only supplying --help parameter causes error with no input
#28
trev-f
closed
2 years ago
0
Add detailed usage documentation
#27
trev-f
opened
2 years ago
0
Fix stack overflow error
#26
trev-f
closed
2 years ago
0
Set a resources maximum
#25
t-f-freeman
closed
2 years ago
0
Params format (organization?) in config does not match parameter specifications
#24
trev-f
closed
2 years ago
0
Only use unique prefix name for MultiQC reports
#23
trev-f
closed
2 years ago
0
Perform parameter checks upon initialization of the SRAlignWorkflow class
#22
trev-f
closed
2 years ago
0
Add option to make HISAT2 splicing aware
#21
trev-f
closed
2 years ago
0
Combine raw reads and trimmed reads FastQC and MultiQC
#20
trev-f
closed
2 years ago
0
Add command stubs
#19
trev-f
closed
2 years ago
0
Add deepTools library stats
#18
trev-f
closed
2 years ago
0
Accept bam files as input
#17
trev-f
closed
2 years ago
0
Reformat modules to subdirectories according to function
#16
trev-f
closed
2 years ago
0
Add Encode library complexity metrics
#15
trev-f
opened
2 years ago
2
Try to run preseq lc_extrap in quick mode
#14
trev-f
closed
2 years ago
1
Add multithreading to samtools index
#13
trev-f
closed
2 years ago
0
Add samtools sort multithreading
#12
trev-f
closed
2 years ago
0
Add multithreading
#11
trev-f
closed
2 years ago
0
Add multithreading
#10
trev-f
closed
2 years ago
0
Add write to uncompressed bam
#9
trev-f
closed
2 years ago
0
Fix overall MultiQC config sections to breakup different results from same tool
#8
trev-f
opened
2 years ago
0
Fix inconsistencies in capitalization of SRAlign
#7
trev-f
closed
2 years ago
0
Fix quick start in documentation
#6
trev-f
closed
2 years ago
0
Fix pipeline overview documentation
#5
trev-f
closed
2 years ago
0
Add preseq
#4
trev-f
closed
2 years ago
0
Add MultiQC summary report for full pipeline
#3
trev-f
closed
2 years ago
0
Write a better help message
#2
trev-f
closed
2 years ago
0
Move to a separate workflow script
#1
trev-f
closed
2 years ago
0