trias-project / alien-macroinvertebrates

🦀 Alien macroinvertebrates (occurrence and checklist dataset)
http://trias-project.github.io/alien-macroinvertebrates
MIT License
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Make single alien-macroinvertebrates repo #12

Closed peterdesmet closed 6 years ago

peterdesmet commented 6 years ago

Current situation

.. for publishing the alien-macroinvertebrates data.

  1. Raw occ data are stored in NBN DB
  2. Occ data are mapped to Darwin Core in SQL and published on IPT
  3. Published dataset is described in this article: http://www.aquaticinvasions.net/2016/AI_2016_Boets_etal.pdf
  4. Article has species list as Excel as supplementary material
  5. We planned to use that Excel to create a DwC checklist for TrIAS and publish on IPT
  6. A copy of the occurrence data is also hosted on CartoDB, for the website http://inbo.github.io/alien-macroinvertebrates (for which the code is in this repository)

A bit complex and not very reproducible sciency 😄

Proposal

We have a single repository, with:

  1. Raw occurrence data as CSV file (is static anyway)
  2. Script to generate DwC occurrence dataset from that file -> published on IPT
  3. Script to generate (TrIAS) DwC checklist from that file -> published on IPT
  4. Code for the website http://inbo.github.io/alien-macroinvertebrates + CartoDB syncs with occ file (rather than keeping a copy)

That would combine the following:

peterdesmet commented 6 years ago

I would host this new repository under https://github.com/trias-project, but that we have to ensure that http://inbo.github.io/alien-macroinvertebrates keeps working. I'll try to figure out how we can do that.

peterdesmet commented 6 years ago

Repository created, other ones removed. Link still works: http://inbo.github.io/alien-macroinvertebrates