This repository contains the functionality to standardize the data of Boets et al. (2016) to both a Darwin Core checklist and Darwin Core occurrence dataset that can be harvested by GBIF. The repository also contains the code for a website to explore the occurrence data. It was developed for the TrIAS project.
The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED
should not be edited manually.
├── README.md : Description of this repository
├── LICENSE : Repository license
├── alien-macroinvertebrates.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── data
│ ├── raw : Source data, input for mapping script
│ └── processed : Darwin Core output of mapping script GENERATED
│
├── docs : Repository website GENERATED
│
├── specifications : Data specifications for the Darwin Core files
│
└── src
├── dwc_checklist.Rmd : Darwin Core mapping script for checklist dataset
├── dwc_occurrence.Rmd : Darwin Core mapping script for occurrence dataset
├── _site.yml : Settings to build website in docs/
└── index.Rmd : Template for website homepage
dwc_checklist.Rmd
or dwc_occurrence.Rmd
R Markdown file in RStudioRun > Run All
to generate the processed dataBuild > Build website
to generate the processed data and build the website in docs/