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trvrb
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antigen
Simulating virus evolution and epidemiology
http://bedford.io/projects/antigen/
19
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6 cluster sklearn
#24
thienktran
closed
2 years ago
0
Output cases per day, deme, and variant
#23
huddlej
opened
2 years ago
2
Output case counts per day and deme
#22
huddlej
opened
2 years ago
3
Fix initialization of host birth date
#21
trvrb
closed
7 years ago
0
Reimplemented commonAncestor() to work when MRCA is ur-virus
#20
edbaskerville
closed
9 years ago
1
Waning
#19
trvrb
closed
9 years ago
0
Allow for timesteps other than 1 day
#18
trvrb
closed
10 years ago
0
Implement proper tau-leaping accounting
#17
trvrb
closed
10 years ago
0
Allow waning
#16
trvrb
closed
9 years ago
0
Include option for fixed step size
#15
trvrb
closed
10 years ago
0
Fix negative diversity values
#14
trvrb
closed
10 years ago
0
Output tree imbalance
#13
trvrb
opened
10 years ago
0
Output Tajima's D
#12
trvrb
opened
10 years ago
0
Output random number seed to out.summary
#11
trvrb
opened
10 years ago
0
Output end time to out.summary
#10
trvrb
closed
10 years ago
0
Include reseeding
#9
trvrb
opened
10 years ago
0
Load parameters dynamically
#8
trvrb
closed
10 years ago
0
Average statistics in timeseries
#7
trvrb
closed
10 years ago
0
Allow halting conditions
#6
trvrb
opened
10 years ago
5
Allow recombination
#5
trvrb
opened
10 years ago
0
Calculate pairwise antigenic diversity
#4
trvrb
closed
10 years ago
0
Allow non-sterilizing homologous immunity
#3
trvrb
closed
10 years ago
0
Allow coinfection
#2
trvrb
opened
10 years ago
0
Load parameters dynamically
#1
trvrb
closed
10 years ago
0