tseemann abricate issues

tseemann / abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

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issues

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where I can find the STRAND information

#160 WUD2018 opened 3 years ago
0
Incorrect gene symbols from NCBI database

#159 evolarjun opened 3 years ago
0
extract accession from database

#158 haruosuz opened 3 years ago
0
VFDB run resulting in 0 genes for bacterial genomes

#157 amrgenomics opened 3 years ago
2
how to save the output file

#156 ilkaybuysal opened 3 years ago
1
VFDB don't give subtype for stx genes even though the information is in the database files.

#155 dnbenso opened 3 years ago
0
A database update issue

#154 tiagocabralborelli opened 3 years ago
2
Making our own database error

#153 daniel251994 opened 3 years ago
8
Update of all included databases

#152 fmaguire opened 4 years ago
0
Results are not reproducible

#151 haruosuz opened 4 years ago
3
run multiple databases simultaneously

#150 pabloivan opened 4 years ago
1
Multiple files at once

#149 peflanag opened 4 years ago
1
ERROR: can not find sequence data

#148 TianleiQiu closed 4 years ago
2
Fwd: CARD through ABRicate, finding %identity or length of cut-off

#147 arpcard opened 4 years ago
1
card database was updata .....

#146 feihongloveworld closed 4 years ago
2
Can not find sequence data?

#145 buihoangphuc412 closed 4 years ago
9
blaCTX-M-27 vs blaCTX-M-102

#144 gizzlev opened 4 years ago
3
Could abricate output a fasta file including all the reference sequences had been screened?

#143 mingjuhao opened 4 years ago
1
confusion of number in the annotation such as "blaZ_32"

#142 QianGuoPKU opened 4 years ago
0
Samples missing in output when no hits are found

#141 ireneortega opened 4 years ago
1
Parameters to consider absence/presence of genes in summary report

#140 ireneortega opened 4 years ago
2
Extract sequence from output

#139 buihoangphuc412 closed 4 years ago
2
improved docs on summary table

#138 nick-youngblut closed 4 years ago
2
Issues identifying small genes

#137 TomLawrence1000 opened 4 years ago
2
abricate and prokka

#136 SumeetTiwari07 closed 4 years ago
2
Custom database size limit

#135 Julie-bio opened 4 years ago
4
Update the synopsis

#134 linsalrob opened 4 years ago
1
Different results with the last version

#133 Julie-bio closed 4 years ago
1
Issues in abricate results

#132 ireneortega closed 4 years ago
1
Error with making vfdb database

#131 MelanieBaeck closed 4 years ago
4
Abricate (NCBI db) vs AMRFinder (AMRFinderPlus db) results question

#130 nbawe closed 4 years ago
4
Allow a list of genomes as input

#129 MSMortensen closed 4 years ago
2
ABRicate pre-downloaded databases

#128 maesaar closed 4 years ago
6
please update db/abricate README

#127 EricDeveaud closed 4 years ago
1
create customized virulence database

#126 mabouelk closed 4 years ago
5
Not the best hit gene

#125 hbucqp closed 4 years ago
1
Add some sort of SCORE column

#124 tseemann opened 4 years ago
3
Add MEGARes 2.0 database

#123 Jtrachsel closed 4 years ago
1
Summary tab file

#122 Batstaph closed 4 years ago
1
Add Database Version

#121 whottel closed 4 years ago
2
Updated AMRFinder reference

#120 linsalrob closed 4 years ago
1
blastn analysis shows 98% identity for a gene which is shown to be absent by abricate analysis

#119 tanu121093 closed 4 years ago
6
what does this "/" in coverage_map mean?

#118 wn835166087 closed 4 years ago
1
Issues in abricate results

#117 tanu121093 closed 4 years ago
1
summary option returning "use of uninitialized value in hash element" and ... "in join or string"

#116 sharbie88 closed 4 years ago
2
Abricate stops when finding contigs starting with NNNNN

#115 dutchscientist closed 5 years ago
10
Genes lost in --summary

#114 sxh1136 closed 5 years ago
2
blastx metagenome assembly aligned to custom database too slowly

#113 Ash1One closed 5 years ago
5
Path::Tiny

#112 drahmadghazi closed 5 years ago
7
Problem with Pacbio contig names

#111 crarlus closed 5 years ago
1

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