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tseemann
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mlst
:id: Scan contig files against PubMLST typing schemes
GNU General Public License v2.0
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How Can I return to the old version?
#40
lancetxiao
closed
6 years ago
5
--minscore 100 reports no scheme even if all alleles match
#39
VGalata
closed
6 years ago
8
Add .json output
#38
tseemann
closed
4 years ago
5
No longer outputs header line.
#37
andersgs
closed
7 years ago
1
Option --gff locii.gff
#36
tseemann
opened
7 years ago
0
Replace fasta with gzip/seqret conversion pipe
#35
tseemann
closed
5 years ago
1
Remove need for all the pubmlst files
#34
tseemann
opened
7 years ago
0
mlst Docker container
#33
miguelpmachado
closed
7 years ago
5
Harmonise output between `discovery of scheme mode`, and `forced scheme mode`
#32
andersgs
closed
7 years ago
2
When two schemes have a score of 100, MLST can report the incorrect result
#31
andersgs
closed
7 years ago
3
Get MLST DB location from environmental variable
#30
andersgs
opened
7 years ago
2
Make it clearer that .GBK and .gz is accepted
#29
tseemann
closed
7 years ago
0
Reporting of ST when novel, or partial matches.
#28
andersgs
opened
7 years ago
1
Path to BLAST
#27
malik010
closed
7 years ago
2
Create a GFF of MLST loci
#26
lskatz
opened
7 years ago
0
.gz not detected when file is a symlink
#25
tseemann
closed
7 years ago
0
Different MLSTs for a specie
#24
MathGon
closed
7 years ago
3
Different runs report different schemes
#23
miguelpmachado
closed
7 years ago
2
limit to number of MLST searches?
#22
kwongj
closed
7 years ago
1
Update the schemes?
#21
lskatz
closed
7 years ago
3
A. baumannii Pasteur scheme not in BLAST database
#20
VGalata
closed
8 years ago
1
Species scheme map - can one use it to get the associated genus/species taxon?
#19
VGalata
closed
7 years ago
4
Added a sort to the return statement of names sub in PubMLST.pm to re…
#18
Slugger70
closed
7 years ago
1
Reports koxytoca when no allelles match
#17
tseemann
closed
7 years ago
1
MLST priority in reporting partial matches
#16
andersgs
closed
7 years ago
2
C.diff MLST broken: ST-# and mlst_clade(#)
#15
chrisgulvik
closed
8 years ago
1
blastn version 2.2.28 error
#14
LordRust
closed
8 years ago
2
Typing O. tsutsugamushi and culling limit
#13
embatty
closed
8 years ago
2
Issue with DB retrieval and dependancy
#12
kimleeng
closed
9 years ago
2
MLST giving incorrect alleles and ST
#11
kwongj
closed
9 years ago
2
Added usage statement and wget statement
#10
lskatz
closed
7 years ago
0
NG-MAST
#9
rstabler
closed
9 years ago
4
Latest mlst database includes a new column
#8
kimleeng
closed
9 years ago
3
Distinguish missing allele vs new allelle
#7
tseemann
closed
9 years ago
1
MLST needs a version switch
#6
Slugger70
closed
9 years ago
1
ST not displayed
#5
rodsa
closed
9 years ago
5
bug -- invalid scheme test
#4
pvinuesa
closed
9 years ago
1
schemes() should only return folders
#3
tseemann
closed
10 years ago
1
piddling error in Readme
#2
ghost
closed
10 years ago
1
mac os Mavericks zcat problems
#1
jacarrico
closed
10 years ago
2
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