tseemann mlst issues - Githubissues

tseemann / mlst

:id: Scan contig files against PubMLST typing schemes

GNU General Public License v2.0

201 stars 47 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

expanding --novel output to include matching alleles?

#90 jdalsdurf opened 4 years ago
2
XS error

#89 mredrejo closed 4 years ago
1
cgMLST, wgMLST schemes

#88 ConstantinV closed 4 years ago
1
Sorry Misplaced? Will place in right page.How can we run the nullarbor.pl with assembly option switched off? This may come handy when analysing already assembled genomes available in public databases.

#87 com31 closed 5 years ago
0
Retrieving new alleles in the correct orientation

#86 ramirma closed 5 years ago
1
--novel outputs the same gene if in multiple files

#85 tseemann closed 5 years ago
0
--novel outputting "odd" loci

#84 cimendes closed 5 years ago
3
Script to check all alleles in .txt exist in .tfa and vice versa

#83 tseemann closed 5 years ago
0
problem with adding new database with more than 7 loci

#82 jcgneto opened 5 years ago
13
can't locate Moo.pm in @INC

#81 sharbie88 closed 5 years ago
1
New Scheme error

#80 Merguerrero closed 4 years ago
5
[15:00:59] Could not find 'file'. Please install it and ensure it is in the PATH.

#79 aschuerch closed 5 years ago
2
mlst scheme Clostridium perfringens

#78 martahp closed 5 years ago
4
Two simple issues: choose 2 schemes & header in the regular output

#77 eneasdecarvalho opened 5 years ago
2
Problem with nohup snippy-core

#76 manuss11 closed 5 years ago
1
not finding genes randomly

#75 dwilkin799 closed 5 years ago
4
Update list of Eukaryotic schemes.

#74 andersgs closed 5 years ago
2
Extracting allelle sequence information from sample whole genome

#73 Nits11 closed 5 years ago
4
rmlst error "Can't use an undefined value as a HASH reference at /anaconda/bin/../perl5/MLST/Scheme.pm line 65"

#72 Walwa closed 5 years ago
7
--minscore 50 should not be used when --scheme specified

#71 tseemann closed 6 years ago
0
Cullling limit causing failures

#70 tseemann closed 6 years ago
0
mlst 2.13 fails when exact allele found in alternative scheme

#69 tseemann closed 6 years ago
0
Remove need for 'file' command

#68 tseemann closed 6 years ago
0
cgMLST?

#67 dwilkin799 closed 6 years ago
6
Brucella MLST 21

#66 keyburn closed 6 years ago
16
Allele numbers in duplicated genes appear in random order

#65 andersgs closed 6 years ago
1
Added check for subsequence exact matches

#64 kriskiil opened 6 years ago
2
Adding plasmid MLST schemes

#63 mdphan opened 6 years ago
11
Handling of alleles that are subsequences of other alleles

#62 kriskiil closed 6 years ago
2
issue with output

#61 mcroxen closed 6 years ago
1
[enhancement] Including Clonal Complex in output

#60 dutchscientist opened 6 years ago
4
Handling pstS(-) allele in E.faecium

#59 tseemann closed 6 years ago
3
Check target is a file before proceeding

#58 tseemann closed 6 years ago
0
Remove defunct File::Slurp

#57 tseemann closed 6 years ago
0
Fix spacing in --help

#56 tseemann closed 6 years ago
1
Add --label option to use instead of the filename

#55 tseemann closed 6 years ago
1
Remove fungi schemes with diploid/ambig codes

#54 tseemann closed 6 years ago
1
Add conda installation option to the description

#53 dutchscientist closed 6 years ago
1
IUPAC codes and DSTs

#52 mdhitch closed 6 years ago
1
Add pubMLST reference to docs

#51 tseemann closed 6 years ago
3
Update Yersinia McNally scheme

#50 miguelpmachado opened 6 years ago
3
Added Singularity recipe

#49 andersgs closed 2 years ago
0
Add Feb 2018 new schemes to the scheme_species.tab file

#48 tseemann opened 6 years ago
0
Homebrew-Science is now deprecated and the repository is archived to read only mode

#47 jemueller closed 6 years ago
1
Document how to add your own scheme

#46 tseemann closed 7 years ago
1
Make --help output prettier

#45 tseemann closed 6 years ago
0
--help returns 1

#44 tseemann closed 7 years ago
0
Add --check option for deps

#43 tseemann closed 6 years ago
0
Perl modules

#42 miguelpmachado closed 7 years ago
1
Add scoring system to docs

#41 tseemann closed 6 years ago
0

Previous Next