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tseemann
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nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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Indels in multisample VCF
#201
shimbalama
opened
5 years ago
1
Make again needs to delete distances.tab
#200
tseemann
closed
5 years ago
1
tree builder fails
#199
prmac
closed
5 years ago
1
Add PUBLISH options: dir, user, pass
#198
tseemann
opened
5 years ago
0
Add input.tab file to nullarbor for records
#197
tseemann
closed
4 years ago
0
Add indels to Core panel ?
#196
tseemann
opened
6 years ago
0
argument isn't numeric in numeric lt (<) at sedata.pm line 44
#195
tseemann
closed
6 years ago
1
Add support for Singularity container
#194
andersgs
opened
6 years ago
2
Set trimmomatic configuration in Nullarbor2
#193
manuss11
closed
5 years ago
1
Add some TRAVIS testing?
#192
tseemann
opened
6 years ago
0
Add badges to README
#191
tseemann
closed
6 years ago
0
Error in nw_display in nullarbor 2 (liblua-5.1.so)
#190
manuss11
closed
6 years ago
5
Pipeline error when snippy starts
#189
manuss11
closed
6 years ago
2
makefile exits with error 2 --> no reports
#188
mkleinecke
opened
6 years ago
2
--prefill seems to make prokka run again
#187
tseemann
opened
6 years ago
0
Check input reads are gzipped (suggestion)
#186
telatin
closed
6 years ago
1
Denote masked and het regions in the plots
#185
tseemann
opened
6 years ago
1
(minsize=500, skipped=21) in assembly stats for N50
#184
tseemann
closed
6 years ago
0
Argument " 0.02%" isn't numeric in numeric comparison
#183
tseemann
closed
6 years ago
1
Tree doesn't display bootstraps or put them in exported Newick
#182
tseemann
closed
6 years ago
4
centrifuge version not etected properly
#181
jkibilds
closed
6 years ago
1
"make space" not valid target in 2.x
#180
tseemann
opened
6 years ago
0
Treebuilder fails with cryptic error
#179
pgcudahy
closed
6 years ago
4
--ref FASTA with IDs with pipes get lost in seqret conversion
#178
tseemann
closed
4 years ago
2
Could not find 'trimmomatic'
#177
MARS2280
closed
6 years ago
3
trimmomatic
#176
danielleingle
closed
6 years ago
1
Allow list of alternatives for --prefill
#175
tseemann
opened
6 years ago
0
Add bootstrap options to nullarbor iqtree plugins
#174
tseemann
closed
6 years ago
0
How to install Nullarbor 1 with brew
#173
manuss11
closed
6 years ago
3
Software versions section in report should filter out tools not used
#172
andersgs
opened
6 years ago
1
Skippy 4.0 bug (Can not find required 'vcffirstheader' in PATH)
#171
manuss11
closed
6 years ago
4
Could not find 'fq' (manually installation of nullarbor v2)
#170
manuss11
closed
6 years ago
3
Make prokka a plugin
#169
tseemann
closed
6 years ago
1
Add -fconst sites to iqtree plugin
#168
tseemann
closed
4 years ago
1
Pan-genome has too many genes in it
#167
tseemann
closed
6 years ago
1
Phylocanvas fixed height squashes tree
#166
tseemann
closed
6 years ago
0
iqtree ntmax options issue in iqtree.sh
#165
ramjet10
closed
6 years ago
3
Roary writes roary_EPOCHSECS/ instead if roary/ exists...
#164
tseemann
closed
6 years ago
2
Option to disable pan-genome generation
#163
tseemann
opened
6 years ago
0
Prefilled files have +x chmod
#162
tseemann
closed
6 years ago
1
Auto generate --name if none given
#161
tseemann
closed
6 years ago
0
With lots of isolates, phylocanvas is all squashed up
#160
tseemann
closed
6 years ago
1
--force isn't updating properly
#159
tseemann
opened
6 years ago
0
Add -fconst option to iqtree plugin
#158
tseemann
closed
6 years ago
1
Give MLST a ? when alleles but novel ST
#157
tseemann
opened
6 years ago
1
Use prokka --proteins GBK if user supplies --ref GBK
#156
tseemann
opened
6 years ago
0
Allow --mask option to pass to snippy
#155
tseemann
closed
6 years ago
0
Add --metadata option
#154
tseemann
opened
6 years ago
0
Use phylocanvas for SNP tree
#153
tseemann
closed
6 years ago
0
Fix "Core Genome" to suit new snippy4 core.txt
#152
tseemann
closed
6 years ago
0
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