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tseemann
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nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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MLST database not indicated
#251
deearahman
opened
4 years ago
1
prokka issue [Makefile:127: M008/contigs.gff] Error 2??
#250
foamy1881
closed
4 years ago
1
Nullarbor report without reads
#249
cmkobel
opened
4 years ago
3
Making Txt file Tab for the run
#248
foamy1881
closed
4 years ago
2
This is nullarbor-report.pl 2.0.20191013/ Making folder --> no report
#247
Lneffe
closed
4 years ago
6
Nullarbor html report to a pdf file
#246
MostafaYA
closed
4 years ago
1
Support for multiple lanes PE
#245
cmkobel
closed
4 years ago
2
Illegal division by zero at .../miniconda3/bin/fq line 67, <$IN> line 154
#244
sharbie88
closed
4 years ago
5
Running nullarbor.pl on assembled genomes
#243
com31
closed
4 years ago
1
Helper script to split by ST type
#242
tseemann
opened
4 years ago
0
?missing space from nullarbor.pl line 271 for trimmomatic
#241
ajmerritt1
closed
4 years ago
3
isolates (7 off) won't process repeatedly
#240
sharbie88
closed
4 years ago
18
Add preview.mat distances to preview mode
#239
tseemann
closed
4 years ago
0
Report 'DATABASES' not showing Kraken2 when using kraken2
#238
tseemann
closed
4 years ago
1
Need quicktree for mash preview mode
#237
tseemann
closed
4 years ago
1
Resistome summary broken w/ new abricate
#236
tseemann
closed
4 years ago
1
Number of contigs - filtering by default?
#235
chrstraub
closed
4 years ago
3
final report not created - error core.aln
#234
chrstraub
closed
4 years ago
5
Operation not permitted: ln: failed to create hard link
#233
cmkobel
closed
4 years ago
21
Installing Nullabor 2.0 conflicts with existing Python 3.7.1
#232
sharbie88
closed
5 years ago
6
minimap2 dependency
#231
delfair
closed
5 years ago
1
Typo in --help
#230
tseemann
closed
4 years ago
0
Could not find Kraken even added it in PATH
#229
quocviet0908
closed
5 years ago
0
different CDS numbers
#228
skaralegui
closed
4 years ago
3
Documentation says "make report" but it's only v1?
#227
tseemann
closed
4 years ago
0
make: *** No rule to make target 'report'. Stop.
#226
cmkobel
closed
5 years ago
15
Pipeline failed at prokka step
#225
manuss11
closed
5 years ago
1
R versioning and Roary
#224
pjbiggs
closed
5 years ago
1
README.md: removed 'coming soon' from Conda
#223
telatin
closed
4 years ago
1
inquiry of minimum computational requirements for running nullarbor
#222
tigerxu
closed
5 years ago
3
Stuck on last step of nullarbor v2 install (Kraken)
#221
danknight
closed
5 years ago
5
Can not read sequence #1 of 5
#220
ghost
closed
5 years ago
1
Kraken unclassified
#219
thushandesilva
closed
5 years ago
2
Could not find 'trimmomatic'
#218
Munnj90
closed
5 years ago
13
cannot read sequence 2 from input file
#217
thushandesilva
closed
5 years ago
5
conda package dependency issue - kraken & kraken2
#216
pansapiens
closed
4 years ago
11
nullarbor and tormes
#215
YangChaoCN
opened
5 years ago
1
Using one of the samples as reference.gbk
#214
manuss11
closed
4 years ago
2
Can I start the pipeline at the forth step 'Annotation'
#213
tigerxu
closed
4 years ago
2
Nullarbor report failed
#212
mdhitch
closed
5 years ago
1
Undefined subroutine &main::path called at /home/roy/nullarbor/bin/nullarbor.pl line 322, <DATA> line 138.
#211
rgranit
closed
5 years ago
4
Changes to input not forcing Roary rerun
#210
andersgs
opened
5 years ago
2
--mlst flag is not being passed on to mlst call
#209
andersgs
closed
4 years ago
2
Name and length collide in the LOCUS line
#208
shimbalama
closed
5 years ago
1
Mash 2.1 error in nullarbor v2.0.20181010: option p cannot be used with r
#207
ropolomx
closed
5 years ago
6
mlst.tab now missing header?
#206
tseemann
closed
5 years ago
1
Add yield to preview mode
#205
tseemann
closed
4 years ago
0
[12:52:38] Parsed version '2.1' from '2.1'
#204
tseemann
closed
4 years ago
1
symbolic links
#203
dwilkin799
closed
4 years ago
2
Fix deps from roary2svg.pl
#202
tseemann
closed
4 years ago
1
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