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tseemann
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nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
GNU General Public License v2.0
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Update kraken2 database download link
#301
tayabsoomro
opened
8 months ago
0
Can't locate Bio/SeqIO.pm in @INC
#300
claramicro
opened
1 year ago
0
Gubbins
#299
Skiucabe1
opened
1 year ago
0
Custom abricate db
#298
Dangoh
opened
2 years ago
0
start with assembled genomes / cgMLST
#297
shlomobl
opened
2 years ago
1
Error can not read sequence
#296
akarkaba
opened
2 years ago
0
How to update the MLST database
#295
safrye
closed
2 years ago
1
[fai_fetch_seq] Error: fai_fetch failed.
#294
spencer411
closed
2 years ago
1
Centrifuge Issue on Install
#293
peflanag
opened
2 years ago
0
make: *** [3960_Saga/sketch.msh] Error 127
#292
naikd0
opened
2 years ago
0
ERROR: Can not read reference 'NZ_CP012742.1.fna
#291
naikd0
closed
2 years ago
0
ERROR: Isolate 'PNUSAE003912-NH-M03985-170412_S13_L001' - can not read sequence #1 of 1 files: 'PNUSAE003912-NH-M03985-170412_S13_L001_R1.fq'
#290
naikd0
closed
2 years ago
0
ERROR: - can not rea' sequence #2 of 1 files
#289
spencer411
closed
2 years ago
1
error running nullarbor skesa
#288
BettyAC
opened
3 years ago
3
ERROR: Could not run: snp-sites -c -o core.aln core.full.aln make: *** [Makefile:108: core.aln] Error 2
#287
emv6
closed
3 years ago
5
Report not displaying Resistome or Virulome data
#286
sdhair
closed
3 years ago
1
nullarbor --check doesn't see version of shovill although shovill is installed
#285
katerinka-arh
opened
3 years ago
0
no roary and report
#284
balsa012
opened
3 years ago
1
File names
#283
Dangoh
opened
3 years ago
0
snps.vcf files without snp information
#282
tthye1
closed
3 years ago
1
Error installing NULLARBOR
#281
acgonzalezz
opened
3 years ago
3
Set tmp folder?
#280
petroslad
opened
3 years ago
0
Perl v.5.26.0 vs v.5.24.0?
#279
Michael-Sikorski
opened
3 years ago
0
Error related to snippy (samtools:[faidx] Could not build fai index reference/ref.fa.fai)
#278
spencer411
closed
3 years ago
0
No report folder in OUTDIR [Makefile:108: core.aln] Error 255
#277
spencer411
closed
4 years ago
2
Acceptable phred scores?
#276
thewhittestferret
closed
4 years ago
0
centrifuge database problem
#275
abdeljalil-senhaji
opened
4 years ago
1
samtools --version
#274
petroslad
closed
3 years ago
0
Can not read the 2nd files
#273
buihoangphuc412
closed
4 years ago
1
MakeFile:154: ref.fa.fai error 1
#272
peflanag
opened
4 years ago
2
Nullarbor fails at MLST step
#271
mdiricks
opened
4 years ago
0
error2 in make preview command
#270
mdiricks
closed
4 years ago
1
Error: can not read sequence
#269
mdiricks
closed
4 years ago
2
Deleted isolates still present in MLST table
#268
pydupont
opened
4 years ago
1
Query: Mixed sample - separate reads?
#267
peflanag
opened
4 years ago
2
Query: Plasmid Annotation
#266
dan-hud
opened
4 years ago
0
Suggestion: Improved error messages for bad fastqs that cause problems
#265
morganx
opened
4 years ago
1
ERROR: Could not find .aligned.fa/.vcf in 'file' make: *** [Makefile:108: core.aln] Error 2
#264
sharbie88
opened
4 years ago
2
minikraken2 database link needs to be updated
#263
ramay
opened
4 years ago
0
Error - report not written and empty samples
#262
tristanpwdennis
opened
4 years ago
1
Conda install and software versions
#261
hmontenegro
opened
4 years ago
9
make again - can't find pipeline instruction file/s
#260
sharbie88
closed
4 years ago
1
Question about prefilling contigs
#259
cmkobel
opened
4 years ago
7
Makefile:133 issue
#258
peflanag
closed
4 years ago
6
Final report not generated and need help understanding make preview
#257
ramay
closed
4 years ago
9
Kraken quibble
#256
biobrad
closed
4 years ago
1
Conda installation issues
#255
emmadoughty
closed
4 years ago
2
ERROR: Could not determine shovill version using '--version
#254
mabouelk
closed
4 years ago
77
ERROR: Could not find .aligned.fa/.vcf in samplename make: *** [Makefile:108: core.aln] Error 2
#253
sharbie88
closed
4 years ago
6
Core.aln all the same nucleotide?
#252
foamy1881
closed
4 years ago
3
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