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tseemann
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samclip
Filter SAM file for soft and hard clipped alignments
GNU General Public License v3.0
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added clipping
#21
lskatz
opened
3 months ago
0
samtools sort: failed to read header from "-" (snippy_v4.6
#20
ahadlaique
closed
1 year ago
1
options to remove only soft clips or hard clips
#19
jflot
opened
1 year ago
0
Unexpected inversion behaviour. Removes a few % more reads, not returning the removed reads.
#18
StarburstCLA
opened
2 years ago
0
problem using --max 0: keeps soft reads
#17
emlec
opened
3 years ago
0
add unalign parameter
#16
flystar233
opened
3 years ago
0
Remove clipped bases?
#15
apredeus
opened
3 years ago
3
remove unaligned items
#14
flystar233
closed
3 years ago
0
problem using --max to keep only reads with large clippings
#13
jflot
opened
3 years ago
0
Using --max hasn't worked
#12
eoziolor
opened
4 years ago
2
Clipped reads not removed
#11
annecmg
opened
4 years ago
0
Clipping issue at contig ends
#10
tseemann
closed
4 years ago
8
clipping incomplete
#9
thomasvangurp
closed
4 years ago
1
zero clipping at the beginning of the read
#8
avilella
opened
5 years ago
3
Can it handle paired-end data?
#7
fgvieira
opened
5 years ago
1
min clip length
#6
Edison2021
opened
6 years ago
6
Underestimation of alignment end position for long-reads
#5
Adamtaranto
opened
6 years ago
4
sam header missing
#4
michieitel
closed
6 years ago
2
Updateded Bioconda documentation
#3
druvus
closed
6 years ago
1
Doesn't handle SAM header lines
#2
tseemann
closed
6 years ago
0
--help returns errorcode 2
#1
tseemann
closed
6 years ago
0