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tskit-dev
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tskit
Population-scale genomics
MIT License
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Mention that node and individual flags are bitwise
#2851
szhan
closed
9 months ago
3
_tskit.lshmm doesn't take NaN in recombination rates
#2850
szhan
opened
9 months ago
0
Fix numpy warnings
#2849
benjeffery
closed
9 months ago
1
Use setup-python cache
#2848
benjeffery
closed
9 months ago
3
Numpy deprecations
#2847
benjeffery
closed
9 months ago
3
Install numpy with noblas
#2846
benjeffery
closed
9 months ago
1
32 bit CI broken when building numpy
#2845
benjeffery
closed
9 months ago
0
Fix jsonschema validators error
#2844
benjeffery
closed
9 months ago
3
Update data-model.md
#2843
hyanwong
closed
9 months ago
2
Add node metadata
#2842
ShyamieG
closed
9 months ago
15
Release GIL around tskit C API functions?
#2841
benjeffery
closed
9 months ago
4
Jsonschema >4.18.6 incompatibility
#2840
alxsimon
closed
9 months ago
1
`write_vcf` returning position 0
#2838
andrewkern
closed
2 months ago
29
Update mergify config
#2837
benjeffery
closed
10 months ago
0
Use default light code theme
#2836
benjeffery
closed
10 months ago
3
Release infrastructure update
#2835
jeromekelleher
closed
9 months ago
0
Refactor tsk_bit_array_* structures
#2834
jeromekelleher
opened
10 months ago
1
use restrict pointers in tsk_bit_array_* methods
#2833
jeromekelleher
opened
10 months ago
0
Multipopulation two-site statistics
#2832
lkirk
opened
10 months ago
0
Handle missing data in two-locus statistics
#2831
lkirk
opened
10 months ago
1
Windows/Site masking for two-site statistics
#2830
lkirk
opened
10 months ago
10
Python interface for 2-locus statistics
#2829
lkirk
opened
10 months ago
7
Switch to sphinx theme
#2828
benjeffery
closed
10 months ago
5
Random numba failures on python 3.7
#2827
jeromekelleher
closed
11 months ago
0
Test infrastructure maint
#2826
jeromekelleher
closed
11 months ago
1
Add tsk_tree_position_step function to C API
#2825
duncanMR
closed
4 months ago
0
Change samples_only default for ``random_ploidy_individuals``to True
#2824
jeromekelleher
closed
11 months ago
0
Divmat sample_sets
#2823
jeromekelleher
closed
6 months ago
15
Full pedigrees + genealogical relatedness
#2821
fouerghi
closed
11 months ago
1
Add span normalise
#2820
jeromekelleher
closed
11 months ago
1
Add seek_backward function with tests
#2819
duncanMR
closed
11 months ago
7
Add span_normalise to divergence_matrix
#2818
jeromekelleher
closed
11 months ago
0
Move C stats methods to ``stats.h``
#2817
jeromekelleher
opened
11 months ago
2
normalization for two-locus, multiallelic stats?
#2816
petrelharp
opened
11 months ago
1
Add tests for genotype imputation
#2815
szhan
opened
11 months ago
17
Including the tests folder in the Pypi distribution
#2814
alxsimon
opened
11 months ago
7
Better divmat site mode
#2813
jeromekelleher
closed
11 months ago
10
Remove legacy h5py based formats
#2812
benjeffery
opened
11 months ago
5
Fix 32bit CI
#2811
benjeffery
closed
11 months ago
6
Document use of the individual.parent pedigree structure
#2810
hyanwong
opened
11 months ago
1
TableCollection method to adjust times
#2809
hyanwong
opened
11 months ago
3
Multi-arg tMRCA
#2808
hyanwong
closed
11 months ago
3
Correct doc instances of "raises"
#2807
hyanwong
closed
11 months ago
0
Two Locus Statistics C API
#2805
lkirk
closed
10 months ago
15
Account for multiallelics in emission probabilities
#2804
astheeggeggs
opened
1 year ago
1
Remove redundant compress() in backwards algorithm
#2803
jeromekelleher
opened
1 year ago
0
Add test_imputation.py file
#2802
jeromekelleher
opened
1 year ago
27
Tree.tmrca error when MRCA does not exist
#2801
hyanwong
closed
11 months ago
3
Clarify tree.mrca if MRCA does not exist
#2800
hyanwong
closed
1 year ago
1
LS model refactoring
#2799
jeromekelleher
closed
11 months ago
3
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