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tskit-dev
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tskit
Population-scale genomics
MIT License
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Error pip install tskit on Windows
#2914
LauraBertola
closed
3 months ago
2
Use reusable workflows across repos?
#2913
jeromekelleher
opened
3 months ago
2
Two locus branch stats python prototype
#2912
lkirk
closed
2 months ago
10
Implement efficient seeking from non-null trees using tree_pos
#2911
duncanMR
opened
4 months ago
4
Installing tskit on Windows
#2910
daikitag
closed
3 months ago
7
Add note about creating a reverse node map
#2909
hyanwong
closed
4 months ago
2
Dividing by zero should be NaN
#2908
lkirk
closed
4 months ago
2
Should 2-locus ratio statistics return NaN on 0/0?
#2907
lkirk
closed
4 months ago
4
Two locus user-facing python ld matrix API
#2906
lkirk
closed
4 months ago
4
clarity on use of tskit.union()
#2905
ShyamieG
closed
4 months ago
4
Simpler, more efficient interface for pair coalescence rates
#2904
nspope
opened
4 months ago
6
Add 'mid' property to Interval class
#2903
jeromekelleher
opened
4 months ago
0
Python LD Matrix API
#2902
lkirk
closed
4 months ago
15
Error when the VCF will have a zero position site
#2901
benjeffery
closed
1 month ago
10
Testing CI
#2900
benjeffery
closed
5 months ago
1
Number of variable sites (not just num_sites)
#2899
hyanwong
opened
5 months ago
1
write_vcf should use the reference sequence for REF, if present
#2898
hyanwong
opened
5 months ago
0
Documentation for IBD segments
#2897
jeromekelleher
opened
5 months ago
0
Add support for MRCA based IBD
#2896
jeromekelleher
opened
5 months ago
2
Numpy 2.0 Python
#2894
jeromekelleher
closed
3 weeks ago
5
C API for numpy 2.0
#2893
jeromekelleher
opened
5 months ago
4
More flexible interpretation of mutation rate when getting emission probability when using `_tskit.lshmm`
#2891
szhan
opened
5 months ago
4
Document divergence_matrix
#2890
jeromekelleher
opened
5 months ago
0
Document genetic_relatedness_matrix
#2889
jeromekelleher
opened
5 months ago
0
Sample_sets incorrect in genetic_relatedness_matrix
#2888
jeromekelleher
opened
5 months ago
14
Add direct links to Python and C APIs from README
#2887
hyanwong
opened
5 months ago
1
extend edges misses some extendable edges
#2884
petrelharp
opened
6 months ago
0
Can I get a list of descendants of a branch (edge)?
#2882
hanbin973
opened
6 months ago
11
“Edit on GitHub” link missing from tskit docs
#2881
TymekPieszko
opened
6 months ago
0
Add c/CMakeLists.txt
#2880
lukashuebner
opened
6 months ago
8
Fix dep versions
#2875
benjeffery
closed
7 months ago
1
Add tree_pos to tsk_tree_t struct and change next, prev and seek_from_null to use tree_pos
#2874
duncanMR
closed
4 months ago
25
Topology counter not aligning with coalescent expectation
#2872
TymekPieszko
opened
7 months ago
10
Fix draw_svg warning for mutations above unplotted nodes
#2871
duncanMR
closed
7 months ago
3
Warning for `draw_svg` plot uses `logging` module instead of `warnings`
#2870
duncanMR
opened
7 months ago
2
leaks when loading tree sequence in SLiM
#2868
bhaller
closed
8 months ago
26
Add tree_pos to tsk_tree_t struct
#2867
duncanMR
closed
7 months ago
8
tmrca error when common ancestor does not exist
#2866
daikitag
closed
8 months ago
2
Specify sites for two-site statistics
#2863
lkirk
closed
5 months ago
16
Support all-nodes matching in LSHMM
#2861
jeromekelleher
opened
9 months ago
1
Add python 3.12 support
#2860
benjeffery
opened
9 months ago
1
Post release tasks
#2859
benjeffery
closed
9 months ago
1
Prepare for 0.5.6 release
#2858
benjeffery
closed
9 months ago
1
Update pypi release auth
#2857
benjeffery
closed
9 months ago
1
Remove 3.7 and update pre-commit to 3.8
#2856
benjeffery
closed
9 months ago
1
Python 3.12 support
#2855
benjeffery
opened
9 months ago
1
Add macros to LsHmm_forward_matrix and LsHmm_backward_matrix
#2853
szhan
closed
9 months ago
5
Mention bitwise flag values in nodes_flag and individuals_flag
#2852
szhan
closed
9 months ago
1
Mention that node and individual flags are bitwise
#2851
szhan
closed
9 months ago
3
_tskit.lshmm doesn't take NaN in recombination rates
#2850
szhan
opened
9 months ago
0
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