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tskit-dev
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tskit
Population-scale genomics
MIT License
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Cannot pickle '_tskit.Tree' object
#2971
Silloky
closed
6 days ago
3
Post release tasks
#2969
benjeffery
opened
3 weeks ago
1
Pass a numpy array of booleans to python simplify?
#2968
hyanwong
closed
2 weeks ago
7
Post release tasks
#2967
benjeffery
closed
3 weeks ago
1
Fix tests for lshmm 0.0.8
#2966
szhan
closed
3 weeks ago
9
Drop "benchmark" CI job?
#2965
jeromekelleher
opened
4 weeks ago
0
Compile on numpy2
#2964
jeromekelleher
closed
3 weeks ago
7
Fix tests for numpy 2.0
#2963
jeromekelleher
closed
3 weeks ago
1
Fixup tests for lshmm 0.0.6
#2962
jeromekelleher
closed
3 weeks ago
7
Post release for 0.5.7
#2961
jeromekelleher
closed
3 weeks ago
1
Add 'mid' property to Interval class
#2960
currocam
opened
1 month ago
10
Fix CI
#2959
benjeffery
closed
1 month ago
1
Fix CI
#2958
benjeffery
closed
1 month ago
0
Pin to numpy<2
#2957
benjeffery
closed
1 month ago
1
Document correct module for MetadataSchema
#2956
hyanwong
closed
1 month ago
1
Correct spelling etc in pack and unpack array routines
#2955
hyanwong
closed
1 month ago
3
Switch to ruff linting
#2952
benjeffery
opened
1 month ago
7
Split large numbers in html/cli print out.
#2951
benjeffery
opened
1 month ago
0
trees.c Compilation Error
#2950
micailamarcelle
closed
1 month ago
2
Specify positions for branch LD matrix
#2949
lkirk
closed
1 month ago
5
time windows in statistics
#2948
petrelharp
opened
2 months ago
6
Update actions versions
#2947
benjeffery
closed
2 months ago
1
Update pre-commit
#2946
benjeffery
closed
2 months ago
1
Drop metadata schemas on tables.
#2945
jeromekelleher
closed
2 months ago
2
Add XTable.drop_metadata
#2944
jeromekelleher
closed
2 months ago
1
Update GitHub upload/download artefacts
#2943
jeromekelleher
closed
2 months ago
0
Add sample sets to the python branch LD prototype
#2941
lkirk
closed
2 months ago
4
Correct typo in stats
#2939
hyanwong
closed
2 months ago
0
extend path algorithm (extend_edgesV2)
#2938
hfr1tz3
opened
2 months ago
3
Drop codecov target for lwt to 80%
#2937
jeromekelleher
closed
2 months ago
0
keep_intervals() giving _tskit.LibraryError: Can't squash, flush, simplify or link ancestors...
#2936
TymekPieszko
closed
1 day ago
7
Fix osx tests
#2935
benjeffery
closed
2 months ago
3
Two locus branch stats python prototype
#2934
lkirk
closed
2 months ago
11
remove 1/2 in branch AFS: closes #2925
#2933
petrelharp
closed
2 months ago
11
Low level pair coalescence counts
#2932
nspope
opened
3 months ago
2
Codecov upload issues
#2931
benjeffery
opened
3 months ago
1
Fix codecov paths
#2930
benjeffery
closed
3 months ago
2
edges lost after merging two trees
#2929
ShyamieG
closed
2 weeks ago
20
Set explict paths for codecov
#2928
benjeffery
closed
3 months ago
2
another try at #2915
#2927
petrelharp
closed
3 months ago
3
Folded AFS between branch and site modes differs by factor of two
#2925
nspope
closed
2 months ago
7
Test coverage report
#2924
benjeffery
closed
3 months ago
1
Bug assertion in `ts.allele_frequency_spectrum`
#2923
nspope
opened
3 months ago
8
Test codecov
#2922
benjeffery
closed
3 months ago
10
Update codecov action
#2921
benjeffery
closed
3 months ago
1
Add `pair_coalescence_counts` method
#2920
nspope
closed
3 months ago
8
TreeSequence.f2 is not symmetric with multiallelic sites
#2919
BenjaminPeter
opened
3 months ago
3
Fix codecov yml
#2918
benjeffery
closed
3 months ago
3
Add node_is_sample array
#2917
jeromekelleher
opened
3 months ago
0
Update development.md
#2916
daikitag
closed
3 months ago
1
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