Utilities for evaluating large genetic genealogies (e.g. ARGs) stored in the tskit "succinct tree sequence" format.
This is targetted at ARGs that have been inferred using a variety of inference tools such as tsinfer, sc2ts, Relate, kwARG, ARGneedle, etc.
To launch the app use:
python -m tsqc /path/to/trees-file
On WSL, it may be necessary to disable Numba's CUDA support:
NUMBA_DISABLE_CUDA=1 python -m tsqc /path/to/trees-file
Tsqc is currently in development. To install the latest dev version from github, try
python -m pip install git+https://github.com/tskit-dev/tsqc