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turbomam / mixs-subset-examples-first

A subset of the MIxS specification that's self-documenting and DataHarmonizer compatible. Comes with valid and invalid data examples. Subset = all checklists and all environmental packages, but partial combinations.
https://turbomam.github.io/mixs-subset-examples-first/
MIT License
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filter assets/mixs_combined.tsv on Environmental package = soil, water or (empty) #10

Closed turbomam closed 1 year ago

turbomam commented 1 year ago

No conflicts between soil, water and (empty)!

Lots of conflicts with agriculture.

What might have a small number of conflicts?

Environmental package Count - Environmental package
agriculture 161
air 29
built environment 162
food-animal and animal feed 105
food-farm environment 144
food-food production facility 104
food-human foods 112
host-associated 50
human-associated 53
human-gut 37
human-oral 36
human-skin 37
human-vaginal 45
hydrocarbon resources-cores 82
hydrocarbon resources-fluids/swabs 86
microbial mat/biofilm 64
miscellaneous natural or artificial environment 46
plant-associated 76
sediment 70
soil 58
symbiont-associated 72
wastewater/sludge 40
water 85
(empty)
Total Result 1754
turbomam commented 1 year ago

I was able to move ahead with an unfiltered, all-packages proposal.