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turbomam / mixs-subset-examples-first

A subset of the MIxS specification that's self-documenting and DataHarmonizer compatible. Comes with valid and invalid data examples. Subset = all checklists and all environmental packages, but partial combinations.
https://turbomam.github.io/mixs-subset-examples-first/
MIT License
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temporarily remove slots with digit-first names #64

Open turbomam opened 1 year ago

turbomam commented 1 year ago

these can't be generated as proprieties of a class in the Python Data Classes

MIXS ID Structured comment name identifier Item aliases range structured_pattern minimum_value maximum_value Occurrence - > multivalued, vmap: {1: false, m: true} see_also examples Example todos comments notes Preferred unit Definition Expected value Value syntax temporal likely enum likely semantic root
> slot_uri slot identifier title aliases range structured_pattern minimum_value maximum_value annotations see_also examples ignore todos comments notes annotations annotations annotations annotations ignore ignore ignore
> inner_key: syntax inner_key: occurrence inner_key: global_preferred_unit inner_key: global_raw_definition inner_key: global_expected_value inner_key: global_value_syntax
>
> internal_separator: "|" internal_separator: "|" internal_separator: "|" internal_separator: "|" internal_separator: "|" internal_separator: "|"
MIXS:0000065 16s_recover 16S recovered boolean 1 yes Can a 16S gene be recovered from the submitted SAG or MAG?
MIXS:0000066 16s_recover_software 16S recovery software string {software};{version};{parameters} 1 rambl;v2;default parameters Tools used for 16S rRNA gene extraction names and versions of software(s), parameters used