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turbomam / mixs-subset-examples-first

A subset of the MIxS specification that's self-documenting and DataHarmonizer compatible. Comes with valid and invalid data examples. Subset = all checklists and all environmental packages, but partial combinations.
https://turbomam.github.io/mixs-subset-examples-first/
MIT License
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make sure that run-linikml-examples works for *validation* and *conversion* #73

Open turbomam opened 1 year ago

turbomam commented 1 year ago

from https://github.com/microbiomedata/submission-schema/blob/main/project.Makefile

examples/output/README.md: src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml \
src/data/invalid src/data/valid
    mkdir -p $(dir $@)
    # RDF/TTL generation is failing
    # https://github.com/microbiomedata/submission-schema/issues/13
    $(RUN) linkml-run-examples \
        --output-formats json \
        --output-formats yaml \
        --counter-example-input-directory $(word 2,$^) \
        --input-directory $(word 3,$^) \
        --output-directory $(dir $@) \
        --schema $< > $@
turbomam commented 1 year ago

see