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turbomam
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mixs-subset-examples-first
A subset of the MIxS specification that's self-documenting and DataHarmonizer compatible. Comes with valid and invalid data examples. Subset = all checklists and all environmental packages, but partial combinations.
https://turbomam.github.io/mixs-subset-examples-first/
MIT License
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add a primary key
#62
turbomam
opened
1 year ago
1
add rows from data/duplicated_scns_by_id.tsv back into...
#61
turbomam
opened
1 year ago
0
temporary occurrence annotation
#60
turbomam
closed
1 year ago
0
oops forgot to check these in
#59
turbomam
closed
1 year ago
0
temporarily replace occurrence column with an annotation
#58
turbomam
closed
1 year ago
0
start working on enums
#57
turbomam
opened
1 year ago
0
add structured pattern settings
#56
turbomam
opened
1 year ago
0
disable multivalued assertions and replace with multivalued-tolerant validation patterns
#55
turbomam
opened
1 year ago
0
move files in data/ and example/ into cookiecutter expected paths
#54
turbomam
opened
1 year ago
0
database class defined dynamically
#53
turbomam
closed
1 year ago
0
env packs reqs incl in sheets2linkml
#52
turbomam
closed
1 year ago
0
env packages usage (mostly annotations)
#51
turbomam
opened
1 year ago
0
env packages requirements
#50
turbomam
closed
1 year ago
0
initial table of env pack terms reqs
#49
turbomam
closed
1 year ago
0
Make a checklist oriented usage sheet?
#48
turbomam
opened
1 year ago
0
Add env package requirements sheet. Include usage and or annotations?
#47
turbomam
opened
1 year ago
3
catalog the manually created or curated files in /data
#46
turbomam
opened
1 year ago
0
Automate creation of Database slots for each class
#45
turbomam
closed
1 year ago
0
See alsos & examples
#44
turbomam
closed
1 year ago
0
eliminate non-ASCII characters
#43
turbomam
opened
1 year ago
0
check validity of URLs; pick a preferred CURIe resolver
#42
turbomam
opened
1 year ago
0
normalize tokens in structured comment names
#41
turbomam
opened
1 year ago
0
see_also column in schemasheets doesn't handle internal_separator: “|”
#40
turbomam
closed
1 year ago
0
unprotected/unquoted structured_pattern values in schemasheets error out
#39
turbomam
closed
1 year ago
0
minimum_value and maximum_value values in schemasheets are serialized as strings
#38
turbomam
opened
1 year ago
0
what values are allowed for linkml booleans?
#37
turbomam
opened
1 year ago
0
removed old and package dirs
#36
turbomam
closed
1 year ago
0
validated SoilMims data
#35
turbomam
closed
1 year ago
0
start destructively removing content from mixs_combined_all_modified.tsv if also present in a more structured column
#34
turbomam
closed
1 year ago
0
cleaned up conflicting Expected values
#33
turbomam
closed
1 year ago
0
examples cleanup
#32
turbomam
closed
1 year ago
0
Occurrence cleanup
#31
turbomam
closed
1 year ago
0
no discrepancies in id, scn or def
#30
turbomam
closed
1 year ago
0
improvements to find_contradictions
#29
turbomam
closed
1 year ago
0
add "see also" and "NCBI acknowledged" to find_contradictions output
#28
turbomam
closed
1 year ago
0
intuitive directory structure; consistent concept naming; consistent score reporting
#27
turbomam
closed
1 year ago
0
lets get professional
#26
turbomam
opened
1 year ago
0
provide both raw and scaled contradiction scores in pairwise and summary tables
#25
turbomam
closed
1 year ago
0
choose a better directory structure esp assets and keep
#24
turbomam
closed
1 year ago
0
standardize language like contradictions, worst offenders, multi-pairings...
#23
turbomam
opened
1 year ago
0
Slotdef doc link
#22
turbomam
closed
1 year ago
0
presentation typos
#21
turbomam
closed
1 year ago
0
Update README.md
#20
turbomam
closed
1 year ago
0
Docs aren't building because of unclean tree
#19
turbomam
opened
1 year ago
2
presentation.md = curated log
#18
turbomam
closed
1 year ago
0
start collecting log of actions and results to included in presentation
#17
turbomam
closed
1 year ago
0
#15 worst offenders report target
#16
turbomam
closed
1 year ago
0
update project.Makefile for worst offender reports
#15
turbomam
closed
1 year ago
0
detailed contradiction report
#14
turbomam
closed
1 year ago
0
add raw contradiction by environmental package pair report to worst_offender.py
#13
turbomam
closed
1 year ago
1
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