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tvpham / iq

An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
BSD 3-Clause "New" or "Revised" License
19 stars 9 forks source link

Command line utility? #16

Open hguturu opened 2 months ago

hguturu commented 2 months ago

I saw the C++ implementation of iq had some command line flags - https://github.com/tvpham/iq/blob/master/src/iq.cpp#L383. Are there any plans to release a command line version of this tool so it can be called directly without R? Or does one already exist?

tvpham commented 2 months ago

hi, we intended to develop command line tools. R is very good for cross-platform integration (C++ compiler, math libraries, etc). You can create command line tool with R too (R CMD). So currently we have no plan to make a separate command tool independent of R. But that might change in the future.