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tvpham / iq

An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
BSD 3-Clause "New" or "Revised" License
19 stars 9 forks source link

Would it be possible to add an option so that the output values are not log2-transformed #9

Closed fcyu closed 1 year ago

fcyu commented 1 year ago

The estimate matrix from fast_maxlfq has log2-transformed values, which I think should be highlighted in the documentation so that users won't mistakenly treat they as "original" intensity.

It would be great to add an option to transform the value back.

Thanks,

Fengchao

tvpham commented 1 year ago

Thanks. It is noted.

Thang

tvpham commented 1 year ago

I have updated the documentation to make it clear that the output is in log2 space.