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twallema
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pySODM
Simulating and Optimising Dynamical Models in Python 3
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Mention PR 92 in readme
#93
twallema
closed
23 hours ago
0
Add the option to manually define the simulation start when calibrating a model
#92
twallema
closed
23 hours ago
0
Remove hit counter in readme, it returns an internal server error
#91
twallema
closed
6 days ago
0
Enable retaining floats in function list_to_dict in log posterior probability function
#90
twallema
closed
6 days ago
0
Change to 50% KDE move, 25% DE move, 25% DESnookermove for more mobile chains
#89
twallema
closed
6 days ago
0
Implement lognormal log likelihood function
#88
twallema
closed
6 days ago
0
Add in a 25% chance of using an emcee.DESnookermove by default
#87
twallema
closed
6 days ago
0
Use nplog1p in poisson/negbinom likelihood function
#86
twallema
closed
6 days ago
0
Manual seeding randomness in JumpProcess class using "fork" multiprocessing
#85
twallema
closed
1 week ago
0
change the behavior of retain_floats to False because it does not wor…
#84
twallema
closed
1 week ago
1
Prohibit automatic multithreading in Numpy, Tensorflow & Torch for large matrices
#83
twallema
closed
1 week ago
0
Allow uniform priors to handle infinite bounds --> equivalent to having "no prior"
#82
twallema
closed
1 week ago
0
remove if: github.event_name == 'push' from deploy docs workflow file
#81
twallema
closed
1 month ago
0
something tiny
#80
twallema
closed
1 month ago
0
Update local docs build commands
#79
twallema
closed
1 month ago
0
Make documentation intro and readme more succinct
#78
twallema
closed
1 month ago
0
Split base.py in ODE and JumpProcess
#77
twallema
opened
1 month ago
0
Change name of tutorial conda environment
#76
twallema
closed
1 month ago
0
Draw functions with flexible number of parameters
#75
twallema
closed
1 month ago
0
Test if a draw function is a function in `validate_draw_function`
#74
twallema
closed
1 month ago
0
Close issue 62, change names input parameters 'draw_functions' to 'parameters' and 'samples' instead of 'param_dict' and 'samples_dict'
#73
twallema
closed
2 months ago
0
Simplify influenza data conversion script
#72
twallema
closed
2 months ago
0
Change BE demographics to Jan 1, 2018 for influenza case study
#71
twallema
closed
2 months ago
0
Tryout on MacBook pro 14
#70
twallema
closed
3 months ago
0
Address warnings + remove warning suppression
#69
twallema
closed
4 months ago
0
Change license from MIT to CC-BY-NC-SA.
#68
twallema
closed
4 months ago
0
Validate use of Python 3.12
#67
twallema
closed
4 months ago
0
Bugs in documentation reported by Rita
#66
twallema
closed
6 months ago
0
test of docs
#65
twallema
closed
9 months ago
0
Bugs in installation + Bump to version 0.2.4
#64
twallema
closed
9 months ago
0
Error performing `df.values` in `__call__()` method of class `log_posterior_probability()` when optimising a model with a timeseries of length 1
#63
twallema
opened
1 year ago
0
'samples_dict' in a draw function, 'samples' in simulation function
#62
twallema
closed
1 month ago
2
`ODEModel` class --> `ODE`
#61
twallema
closed
1 year ago
0
Rename `state_dimensions` --> `dimensions_per_state` in model declaration
#60
twallema
closed
1 year ago
0
rename SDEModel JumpProcess and update docs
#59
twallema
closed
1 year ago
0
Drop suffix names in model declaration
#58
twallema
closed
1 year ago
0
Improve scaleability of multinomial sampling in `_tau_leap()`
#57
twallema
closed
1 year ago
0
Omit dependency on numba in base.py
#56
twallema
closed
1 year ago
0
Validate the use of python 3.11
#55
twallema
closed
1 year ago
0
pass-date-as-timestamp-to-integration-functions
#54
twallema
closed
1 year ago
0
Avoiding the use of enumerate in _draw_transitionings seems to result in a small speedup
#53
twallema
closed
1 year ago
0
Omit use of pd.Timestamp/pd.to_datetime/pd.Timedelta in favor of datetime alternative
#52
twallema
closed
1 year ago
0
Peer review R1
#51
twallema
closed
1 year ago
0
The suffix '_names' in the model declaration seems redundant
#50
twallema
closed
1 year ago
1
Defining observed model states and observation process in model declaration
#49
twallema
opened
1 year ago
1
Make bounds obligatory in perturbate theta
#48
twallema
closed
1 year ago
0
remove warning - not a good idea when simulating in parallel
#47
twallema
closed
1 year ago
0
Update version publish py pi
#46
twallema
closed
1 year ago
0
Fixed-length discrete time stepper for ODEModels
#45
twallema
closed
1 year ago
0
raise an error in sim function if N>1 and no draw function is provided
#44
twallema
closed
1 year ago
1
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