An integrated platform for modeling gene-regulatory dynamics and networks.

News

Changelog - 2024-07-20: To fix the getTimeRNA error.

Changelog - 2023-12-05: To match the valr version 0.7.0.

If you encounter a bug, please install the latest version of cisDynet first.

cis-regulatory chromatin dynamics and networks (cisDynet)

Comparisons

Workflow

Installation

if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")

devtools::install_github("tzhu-bio/cisDynet")

Full Manual

See Full Manual to get the tutorial.

Publication

Zhu, Tao, Zhou, Xinkai, You, Yuxin, Wang, Lin, He, Zhaohui, and Chen, Dijun. 2023. “ cisDynet: An Integrated Platform for Modeling Gene-Regulatory Dynamics and Networks.” iMeta e152. https://doi.org/10.1002/imt2.152