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uci-cbcl
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genomix
Parallel genome assembly using Hyracks
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Wbiesing/merge recent
#155
jakebiesinger
closed
5 years ago
1
Elmira/confident seeds retrieval
#154
jakebiesinger
closed
5 years ago
0
Elmira/confident seeds retrieval
#153
Elmira88
closed
10 years ago
1
Wbiesing/split repeat on long nodes
#152
jakebiesinger
closed
5 years ago
0
remove autodelete in ExternalTreeSet
#151
JavierJia
opened
10 years ago
0
Bubble search in both directions
#150
jakebiesinger
closed
5 years ago
0
Wbiesing/bubble search removes nodes in path
#149
jakebiesinger
closed
10 years ago
1
Wbiesing/rule c is read count
#148
jakebiesinger
closed
5 years ago
0
Wbiesing/bubble search
#147
jakebiesinger
closed
5 years ago
0
add script to run genomix in multiple parameter settings
#146
jakebiesinger
closed
10 years ago
0
Scaffolding options are now commandline options.
#145
jakebiesinger
closed
10 years ago
1
Log walk intersections. Add an option DEBUG_WALK_IDS to keep all walkIds...
#144
jakebiesinger
closed
10 years ago
0
Fix validation map been cleaned up issue
#143
JavierJia
closed
10 years ago
1
Elmira/test mutual overlap
#142
Elmira88
closed
10 years ago
0
Elmira/ray early stop
#141
Elmira88
closed
10 years ago
1
Elmira/bad coverage remove
#140
Elmira88
closed
10 years ago
2
Jianfeng/hdfs storage
#139
JavierJia
closed
10 years ago
0
Seed selection only considers nodes with neighbors in the search direction.
#138
jakebiesinger
closed
10 years ago
1
Elmira/modify ray for merged graph
#137
jakebiesinger
closed
10 years ago
0
Implement simple edge prune
#136
jakebiesinger
closed
10 years ago
0
Wbiesing/delay pruning 01
#135
jakebiesinger
closed
10 years ago
0
Wbiesing/cmd line tweaks
#134
jakebiesinger
closed
10 years ago
0
Wbiesing/small fixes
#133
jakebiesinger
closed
10 years ago
0
polish the readme a little
#132
JavierJia
closed
10 years ago
2
Split file manager
#131
JavierJia
closed
10 years ago
10
Jianfeng/fix readinfoupperbound
#130
JavierJia
closed
10 years ago
0
Jianfeng/shift remove lowcoverage
#129
JavierJia
closed
10 years ago
0
Remove old and no longer used testsuites
#128
anbangx
closed
10 years ago
1
Jianfeng/checkout tests
#127
JavierJia
closed
10 years ago
0
Jianfeng/pregelix page chunking
#126
JavierJia
opened
10 years ago
0
Recover genomix-driver test cases
#125
JavierJia
opened
10 years ago
0
recover
#124
JavierJia
closed
10 years ago
0
create Ray scaffolding test cases
#123
JavierJia
opened
10 years ago
0
Recover genomix-pregelix test cases.
#122
JavierJia
opened
10 years ago
0
Wbiesing/3 jan implement ray mutual overlap and long candidates
#121
jakebiesinger
closed
10 years ago
4
Jianfeng/check offsett problem
#120
JavierJia
closed
10 years ago
0
change fs.create everytime to avoid the fs.close exception
#119
JavierJia
closed
10 years ago
1
Wbiesing/readheadset uses static configuration
#118
jakebiesinger
closed
10 years ago
0
hadoop /user/tmp is cleared automatically; the readid list disappears!
#117
jakebiesinger
closed
10 years ago
2
Fix some bugs in order to run in the big data
#116
anbangx
closed
10 years ago
4
test corrrectness of readoffset using pipeline tests
#115
Nan-Zhang
closed
10 years ago
2
test readHeadoffset after randomly merging
#114
Nan-Zhang
closed
10 years ago
1
add score threshold calculator to Ray Vertex and driver
#113
jakebiesinger
closed
10 years ago
9
scaffolding ideas
#112
jakebiesinger
opened
10 years ago
0
Implement isStartSeed
#111
anbangx
closed
10 years ago
6
concatenated jobs save state
#110
jakebiesinger
opened
10 years ago
4
Anbangx/test cutoff coverage
#109
anbangx
closed
10 years ago
10
add to local options
#108
JavierJia
closed
10 years ago
6
Anbangx/find start seed min length
#107
anbangx
closed
10 years ago
2
change KMP to support query in range
#106
Nan-Zhang
closed
10 years ago
5
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