ucl-cssb MIMIC issues - Githubissues

ucl-cssb / MIMIC

Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions

MIT License

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add version to the documentation and how to automatically update it

#43 Fontanapink opened 8 months ago
0
Packaging updates and project re-structure

#42 Fontanapink closed 8 months ago
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Generate a base class for all simulations and inferences

#41 Fontanapink closed 7 months ago
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see to delete this before merging

#40 Fontanapink opened 8 months ago
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make these arguments specifiable in the parameters.json file file

#38 Fontanapink opened 8 months ago
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VARsimulation

#37 Fontanapink closed 9 months ago
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Packaging Updates and Documentation

#36 Fontanapink closed 9 months ago
1
VARsimulation

#35 Fontanapink closed 9 months ago
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add License.md

#34 Fontanapink closed 8 months ago
1
make Codecov coverage test

#33 Fontanapink opened 11 months ago
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make PyTests for this project

#32 Fontanapink closed 1 month ago
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make tags for different release versions

#31 Fontanapink opened 11 months ago
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Update pull request template and add FIXMEs and bug reporting

#30 Fontanapink closed 11 months ago
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where is this defined?

#29 Fontanapink closed 7 months ago
1
where is this defined?

#28 Fontanapink closed 7 months ago
1
is this `cRidge` defined anywhere? or is it `Ridge`?

#27 Fontanapink opened 11 months ago
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generate_data_perts is not defined anywhere

#26 Fontanapink closed 8 months ago
2
generate_params is not defined anywhere

#25 Fontanapink closed 8 months ago
2
Cb12 14

#24 cpbarnes closed 11 months ago
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Metabolite production rate is proportional to x rather than dx/dt

#23 Fontanapink opened 11 months ago
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Run one gLV example with lots of timepoints

#22 Fontanapink opened 11 months ago
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Multi constraint Lasso not working or very slow

#21 Fontanapink opened 11 months ago
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Perturbations don't have effect in the gMLV model

#20 Fontanapink closed 8 months ago
1
Update requirements.yml to set PROJECT_PATH and REQUIREMENT_PATH to t…

#19 Fontanapink closed 11 months ago
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Add GitHub Actions workflow to update requirements.txt on PR merge

#18 Fontanapink closed 11 months ago
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Update .gitignore and remove .vscode folder

#17 Fontanapink closed 11 months ago
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Add data folder to gitignore and remove from repository

#16 Fontanapink closed 11 months ago
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Update project name and directory structure

#15 Fontanapink closed 11 months ago
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Removed directories

#14 cpbarnes closed 11 months ago
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To-Do's for GitHub Repository

#13 Fontanapink closed 11 months ago
1
Made some updates so that we have better checks/documentation on master branch and pull requests

#12 Fontanapink closed 11 months ago
1
Add .vscode folder to gitignore and update README.md

#11 Fontanapink closed 11 months ago
0
Refactor project structure and update README.md

#10 Fontanapink closed 11 months ago
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Update requirements.txt with new package versions and README file

#9 Fontanapink closed 11 months ago
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Update RNN and simulation code

#8 Fontanapink closed 11 months ago
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Merging all branches into one

#7 Fontanapink closed 11 months ago
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Merged testing_package commits to dev_nt

#6 Fontanapink closed 11 months ago
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non-uniform Lasso penalties

#5 ajfedorec closed 2 years ago
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fix metabolite fitting

#4 ajfedorec closed 2 years ago
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added metabolite production from Clark et al 2021

#3 ajfedorec closed 2 years ago
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pull rewrite of gMLV_sim

#2 ajfedorec closed 2 years ago
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structured, partially linted, running

#1 ajfedorec closed 2 years ago
0