Closed lydiayliu closed 2 years ago
I can take a quick look at this. It's likely that those peptides already exist in the canonical peptide pool.
This makes me think that maybe we should write some stats/summary to the stdout for debugging purpose, like number of variant peptide called, number of peptides existing in canonical peptide pool
yeah i think that's a great idea! it would be reassuring to get some statistics thought might be a little bit more work counting the # of peptides with each "label" (like SNV, SNV-Noncoding, etc)
For this particular case, for all the fusion events, the breakpoints are all after the canonical stop codon, so that's why no peptides were saved.
Ok I guess no action points on this particular fusion! thanks for checking!
Let's close this and I'll open another issue for the summary stuff
Is this possible?
Everything is in here:
/hot/project/algorithm/moPepGen/CCLE/processed/noncanonical-database/call-nonCanonicalPeptide/GRCh38-EBI-GENCODE34/pipeline-meta-call-NonCanonicalPeptide-0.0.1/ACH-000088/call-NonCanonicalPeptide-1.0.0/ACH-000088/moPepGen-0.2.0-cfa2187/output
There's definitely stuff in the file? Even though it's all from the same fusion