README

About

Classes

• PDFigCapX: Extracts the images and captions from input PDF files.
• FigSplit:

Dependencies

• PDFigCapX

  • Binaries to chromedriver
  • Binaries to ImageMagick convert
  • Binaries to xpdf pdftohtml
  • OpenCV2 version 2.4.X, the module does not run in OpenCV2 version 3.X To instantiate the PDFigCapX class, pass all the paths in the constructor.

  To set up an environment in Windows or Mac, build an environment with Anaconda: conda create -n py27 python=2.7 conda install -c menpo opencv conda install -c anaconda numpy conda install -c conda-forge selenium conda install -c anaconda scipy conda install -c anaconda lxml conda install -c anaconda pil

  Mac further needs the installation of Ghostscript https://pages.uoregon.edu/koch/

• FigSplit conda install -c anaconda requests

Run on tinman source ~/virtualenv2/bin/activate cd /usa/jtrell2/Curation-Pipeline/src Xvfb :99 & export DISPLAY=:99 python pipeline_runner.py /usa/jtrell2/Curation-Pipeline/src/config.json /eecis/shatkay/UICCollab/PDFs/Pheno_rel /usa/jtrell2/Curation-UI/dist/images 10

Contact Juan Trelles Trabucco jtrell2@uic.edu Pengyuan Li pengyuan@udel.edu